Factsheet for Solyc03g097030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008182	Potato	peroxisome	96.84	97.01
VIT_16s0039g02040.t01	Wine grape	peroxisome	72.63	75.55
KRH77759	Soybean	peroxisome	71.75	73.69
GSMUA_Achr11P...	Banana	peroxisome, plastid	65.79	70.36
KRH27719	Soybean	peroxisome	65.44	69.2
GSMUA_Achr2P18040_001	Banana	peroxisome, plastid	63.86	67.66
EES05680	Sorghum	peroxisome	65.79	66.25
AT1G65060.1	Thale cress	peroxisome	64.91	65.95
Os02t0697400-01	Rice	plasma membrane	65.44	65.55
Bra004109.1-P	Field mustard	peroxisome	63.51	65.11
CDY07442	Canola	peroxisome	63.51	65.11
CDY39293	Canola	peroxisome	63.33	64.81
TraesCS6D01G248000.1	Wheat	peroxisome, plasma membrane	63.51	63.73
TraesCS6A01G266700.1	Wheat	peroxisome	64.04	63.7
KRH29003	Soybean	plastid	62.98	63.65
TraesCS6B01G294100.1	Wheat	peroxisome	63.86	63.53
HORVU0Hr1G018190.2	Barley	peroxisome	63.16	63.27
Solyc06g068650.2.1	Tomato	peroxisome	58.42	61.33
Solyc03g117870.2.1	Tomato	plastid	58.07	60.73
Solyc12g042460.1.1	Tomato	peroxisome	56.32	58.58
Solyc07g008360.1.1	Tomato	peroxisome	56.84	57.04
Zm00001d051529_P001	Maize	peroxisome, plasma membrane	60.53	54.42
Solyc11g069050.1.1	Tomato	peroxisome	37.72	39.96
Solyc12g094520.1.1	Tomato	plastid	36.14	37.39
Solyc02g088710.2.1	Tomato	peroxisome	34.39	35.44
Solyc03g111170.2.1	Tomato	nucleus	33.68	34.78
Solyc11g007970.1.1	Tomato	peroxisome	34.04	34.34
Solyc08g076300.2.1	Tomato	peroxisome	33.33	33.1

Protein Annotations

Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:7.8.1.1	MapMan:9.2.1.3	InterPro:AMP-bd_C	InterPro:AMP-binding_CS
InterPro:AMP-dep_Synth/Lig	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	UniProt:K4BJC0	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455
PANTHER:PTHR24096	PANTHER:PTHR24096:SF169	SUPFAM:SSF56801	EnsemblPlantsGene:Solyc03g097030.2	EnsemblPlants:Solyc03g097030.2.1	TMHMM:TMhelix
UniParc:UPI0002767FD1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:59381671..59386609

Molecular Weight (calculated)

62084.0 Da

IEP (calculated)

5.256

GRAVY (calculated)

0.106

Length

570 amino acids

Sequence
(BLAST)

001: MVSVATVDAQ KAEILSSVIS TNQNQSSEEL HVFRSKLPDI SISNNIPLHV YLFERLSEFE ERTCIIAGSS GETFTFGETY LICQKIAAGL TMVGIEKGDV
101: IMTFLQNCSE FVFTILASSM IGAVITTANP FYTKSEAFKQ LKASNAKLIV TQSQYVDKFR DPAENDPKIG EDFSVVTIDD PPENCLHFSV LSEAKAEDMP
201: KGVVIHPDDP VALPFSSGTT GLPKGVILTH KSLITGVAQL VDGDNPNFYL KHDDVVLCVL PLFHIFALNS VLLVSLRAGA SVLLMQKFEI SALLELIQKH
301: RVSVAAVVPP LVLALAKNPM VDSFDLSSIR LVLSGAAPLG KELEEALHRR VPQAIFGQGY GMTEAGPVVT MCPAFAKQPF STKSGSCGSV IRNADLKVVD
401: PETGSSLHRN QPGEICIRGS QIMKGYLNDD EATARTIDVD GWLHTGDIGY VDDDDEIYIV DRVKELIKFK GFQVPPAELE SLLISHPDIA DAAVVPQKDD
501: AAGEVPVAFV VRSAQGFDLT EEAIKEFIAK QVVFYKKLHK VYFIHAIPKS PSGKILRKDL RAKLIATPQL

Best Arabidopsis Sequence Match ( AT1G65060.1 )
(BLAST)

001: MITAALHEPQ IHKPTDTSVV SDDVLPHSPP TPRIFRSKLP DIDIPNHLPL HTYCFEKLSS VSDKPCLIVG STGKSYTYGE THLICRRVAS GLYKLGIRKG
101: DVIMILLQNS AEFVFSFMGA SMIGAVSTTA NPFYTSQELY KQLKSSGAKL IITHSQYVDK LKNLGENLTL ITTDEPTPEN CLPFSTLITD DETNPFQETV
201: DIGGDDAAAL PFSSGTTGLP KGVVLTHKSL ITSVAQQVDG DNPNLYLKSN DVILCVLPLF HIYSLNSVLL NSLRSGATVL LMHKFEIGAL LDLIQRHRVT
301: IAALVPPLVI ALAKNPTVNS YDLSSVRFVL SGAAPLGKEL QDSLRRRLPQ AILGQGYGMT EAGPVLSMSL GFAKEPIPTK SGSCGTVVRN AELKVVHLET
401: RLSLGYNQPG EICIRGQQIM KEYLNDPEAT SATIDEEGWL HTGDIGYVDE DDEIFIVDRL KEVIKFKGFQ VPPAELESLL INHHSIADAA VVPQNDEVAG
501: EVPVAFVVRS NGNDITEEDV KEYVAKQVVF YKRLHKVFFV ASIPKSPSGK ILRKDLKAKL C

Arabidopsis Description

4CL34-coumarate--CoA ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S777]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.