Factsheet for GSMUA_Achr11P23450_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

cytosol 1
vacuole 1
peroxisome 3
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P18040_001	Banana	peroxisome, plastid	83.3	82.53
EES05680	Sorghum	peroxisome	74.67	70.32
Os02t0697400-01	Rice	plasma membrane	74.48	69.77
VIT_16s0039g02040.t01	Wine grape	peroxisome	71.29	69.34
TraesCS6D01G248000.1	Wheat	peroxisome, plasma membrane	73.55	69.01
TraesCS6B01G294100.1	Wheat	peroxisome	74.11	68.94
HORVU0Hr1G018190.2	Barley	peroxisome	73.17	68.54
TraesCS6A01G266700.1	Wheat	peroxisome	73.36	68.24
Solyc03g097030.2.1	Tomato	peroxisome	70.36	65.79
PGSC0003DMT400008182	Potato	peroxisome	70.17	65.73
GSMUA_Achr9P22840_001	Banana	peroxisome	46.53	64.92
KRH77759	Soybean	peroxisome	67.54	64.86
AT1G65060.1	Thale cress	peroxisome	66.98	63.64
CDY07442	Canola	peroxisome	66.04	63.31
Bra004109.1-P	Field mustard	peroxisome	66.04	63.31
CDY39293	Canola	peroxisome	65.48	62.66
GSMUA_Achr1P23450_001	Banana	peroxisome	60.6	62.12
GSMUA_AchrUn_...	Banana	peroxisome	60.23	61.97
KRH29003	Soybean	plastid	65.48	61.88
GSMUA_Achr7P05070_001	Banana	peroxisome	56.85	61.46
KRH27719	Soybean	peroxisome	61.73	61.04
GSMUA_Achr4P12590_001	Banana	peroxisome	55.72	60.74
GSMUA_Achr4P05820_001	Banana	peroxisome	59.47	60.73
Zm00001d051529_P001	Maize	peroxisome, plasma membrane	69.98	58.83
GSMUA_Achr5P19650_001	Banana	peroxisome	36.21	39.71
GSMUA_Achr8P14210_001	Banana	peroxisome	36.77	39.52
GSMUA_Achr9P07820_001	Banana	peroxisome	12.95	37.91
GSMUA_Achr6P36020_001	Banana	peroxisome	33.96	36.57
GSMUA_AchrUn_...	Banana	peroxisome	33.21	36.05
GSMUA_Achr5P25570_001	Banana	peroxisome	35.83	34.6
GSMUA_Achr8P13230_001	Banana	peroxisome	32.27	34.19
GSMUA_Achr11P...	Banana	peroxisome, plasma membrane	21.2	33.24
GSMUA_Achr11P...	Banana	peroxisome	32.83	32.17
GSMUA_Achr1P13470_001	Banana	peroxisome	30.39	31.4
GSMUA_AchrUn_...	Banana	peroxisome	30.39	29.51

Protein Annotations

Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:7.8.1.1	MapMan:9.2.1.3	InterPro:AMP-bd_C	InterPro:AMP-binding_CS
InterPro:AMP-dep_Synth/Lig	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016874	EnsemblPlantsGene:GSMUA_Achr11G23450_001	EnsemblPlants:GSMUA_Achr11P23450_001	EnsemblPlants:GSMUA_Achr11T23450_001	UniProt:M0RUS5	PFAM:PF00501
PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF169	SUPFAM:SSF56801	UniParc:UPI00029494FA
SEG:seg	:	:	:	:	:

Description

Probable 4-coumarate--CoA ligase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G23450_001]

Coordinates

chr11:-:23334860..23338078

Molecular Weight (calculated)

57529.1 Da

IEP (calculated)

6.442

GRAVY (calculated)

0.124

Length

533 amino acids

Sequence
(BLAST)

001: MISVASHEAQ PQIPTSSRPP ETQPPETIVF RSKLPDIPIP HHLPLHTYCF EKLPELSEAP CIIAAATGKI YSFSETHLLC RRTAAGLSKL GIEQGDVIMV
101: LLQNSPEFIF TFMGGSMLGA MTTAANPFCT PAEIYKQFKT SGAKVVITQS MYVDKLRATA IPDVTIDPED PVALPFSSGT TGLPKGVMLT HKSLVSSIAQ
201: QVDGENPNLY LKDDDVVLCV LPLFHIFALN SVLLCSLRAG AATMLMPKFE IATMLEGIQR QRVSVAAVVP PLVLALAKNP VVEKYDLTSV RIILSGAAPL
301: GKELEEALRS RVPQAILGQG YGMTEAGPVL SMCPAFAKQP TAVKSGSCGT VVRNAELKVV DPETGFSLGR NQSGEICIRG PQIMKGYLND VDATSKTIDV
401: EGWLHTGDIG YVDDDDEVFI VDRVKELIKF KGFQVPPAEL ESLLISHPSI VDAAVVPQKD DAAGEVPVAF VVRAKDSDVS EEAIKEFIAK QVVFYKRVHK
501: VYFIHAIPKS AAGKILRKEL RAKLVAASQT AST

Best Arabidopsis Sequence Match ( AT1G65060.1 )
(BLAST)

001: MITAALHEPQ IHKPTDTSVV SDDVLPHSPP TPRIFRSKLP DIDIPNHLPL HTYCFEKLSS VSDKPCLIVG STGKSYTYGE THLICRRVAS GLYKLGIRKG
101: DVIMILLQNS AEFVFSFMGA SMIGAVSTTA NPFYTSQELY KQLKSSGAKL IITHSQYVDK LKNLGENLTL ITTDEPTPEN CLPFSTLITD DETNPFQETV
201: DIGGDDAAAL PFSSGTTGLP KGVVLTHKSL ITSVAQQVDG DNPNLYLKSN DVILCVLPLF HIYSLNSVLL NSLRSGATVL LMHKFEIGAL LDLIQRHRVT
301: IAALVPPLVI ALAKNPTVNS YDLSSVRFVL SGAAPLGKEL QDSLRRRLPQ AILGQGYGMT EAGPVLSMSL GFAKEPIPTK SGSCGTVVRN AELKVVHLET
401: RLSLGYNQPG EICIRGQQIM KEYLNDPEAT SATIDEEGWL HTGDIGYVDE DDEIFIVDRL KEVIKFKGFQ VPPAELESLL INHHSIADAA VVPQNDEVAG
501: EVPVAFVVRS NGNDITEEDV KEYVAKQVVF YKRLHKVFFV ASIPKSPSGK ILRKDLKAKL C

Arabidopsis Description

4CL34-coumarate--CoA ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S777]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.