Factsheet for GSMUA_Achr5P25570_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
vacuole 1
peroxisome 3
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45731	Canola	peroxisome	18.66	66.88
EES01913	Sorghum	peroxisome, plastid	61.41	61.08
TraesCS3A01G394300.1	Wheat	peroxisome	61.59	60.71
TraesCS3B01G426300.1	Wheat	peroxisome	61.78	60.68
TraesCS3D01G388100.1	Wheat	peroxisome	61.41	60.32
TraesCS3A01G394200.1	Wheat	peroxisome, plastid	59.96	59.32
VIT_17s0000g01790.t01	Wine grape	peroxisome, plastid	58.88	59.09
HORVU3Hr1G089000.2	Barley	peroxisome, plastid	61.78	58.19
CDY71478	Canola	vacuole	48.37	58.17
CDY45730	Canola	vacuole	48.01	57.73
TraesCS3B01G426200.1	Wheat	peroxisome, plastid	57.79	56.96
PGSC0003DMT400039281	Potato	peroxisome	56.52	56.52
Solyc03g111170.2.1	Tomato	nucleus	56.16	56.16
KRH63739	Soybean	peroxisome, plastid	58.7	55.86
GSMUA_Achr1P13470_001	Banana	peroxisome	51.27	54.84
Os01t0901500-01	Rice	plastid	43.48	54.3
KRH54211	Soybean	peroxisome	58.51	54.1
Bra029229.1-P	Field mustard	peroxisome	54.35	53.67
TraesCS3D01G388000.2	Wheat	peroxisome, plastid	57.79	53.52
Os01t0901600-01	Rice	peroxisome, plastid	57.43	53.01
AT5G63380.1	Thale cress	peroxisome	53.62	52.67
GSMUA_Achr9P07820_001	Banana	peroxisome	17.21	52.2
Zm00001d012144_P001	Maize	plastid	38.77	52.2
VIT_14s0171g00300.t01	Wine grape	peroxisome	51.09	51.93
KRG94318	Soybean	peroxisome, plastid	50.72	51.76
KRH57646	Soybean	peroxisome, plastid	50.91	50.91
VIT_14s0171g00290.t01	Wine grape	peroxisome	46.92	47.87
GSMUA_Achr8P13230_001	Banana	peroxisome	43.3	47.51
VIT_01s0010g02740.t01	Wine grape	peroxisome, plastid	47.28	47.45
GSMUA_AchrUn_...	Banana	peroxisome	39.49	44.4
GSMUA_Achr5P19650_001	Banana	peroxisome	37.86	43.0
GSMUA_Achr8P14210_001	Banana	peroxisome	38.41	42.74
GSMUA_Achr11P...	Banana	peroxisome, plasma membrane	25.0	40.59
GSMUA_Achr9P22840_001	Banana	peroxisome	27.54	39.79
GSMUA_AchrUn_...	Banana	peroxisome	36.96	37.16
GSMUA_AchrUn_...	Banana	peroxisome	34.78	37.07
GSMUA_Achr6P36020_001	Banana	peroxisome	32.97	36.77
GSMUA_Achr11P...	Banana	peroxisome	35.87	36.4
GSMUA_Achr7P05070_001	Banana	peroxisome	32.43	36.31
GSMUA_Achr11P...	Banana	peroxisome, plastid	34.6	35.83
GSMUA_Achr1P23450_001	Banana	peroxisome	33.51	35.58
GSMUA_Achr2P18040_001	Banana	peroxisome, plastid	34.6	35.5
GSMUA_Achr4P12590_001	Banana	peroxisome	31.16	35.17
GSMUA_Achr4P05820_001	Banana	peroxisome	32.97	34.87
KRH57649	Soybean	plastid	16.85	33.21
KRG94321	Soybean	cytosol, golgi, peroxisome	18.66	32.7

Protein Annotations

Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:35.1	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr5G25570_001	EnsemblPlants:GSMUA_Achr5P25570_001	EnsemblPlants:GSMUA_Achr5T25570_001	UniProt:M0T1N2	PFAM:PF00501
PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF251	SUPFAM:SSF56801	TMHMM:TMhelix
UniParc:UPI0002949DC7	SEG:seg	:	:	:	:

Description

4-coumarate--CoA ligase-like 5 [Source:GMGC_GENE;Acc:GSMUA_Achr5G25570_001]

Coordinates

chr5:-:26539823..26547063

Molecular Weight (calculated)

59189.8 Da

IEP (calculated)

7.066

GRAVY (calculated)

0.170

Length

552 amino acids

Sequence
(BLAST)

001: MAAGTPQLPP TVDPRSGFCR ETKVFHNLRD PLPLPPESLP LSAVSFALSL IPSPLPAQPA LVDAATGAAV SYPDFLARIR NLAAALRTGA GVSRGDVAFV
101: LSPAGLDVPV LYLALLSIGA LPAYLPTILL DSPRFRSFIS ADVAAAAAAQ QQQQPVEVRQ SDTAAILYSS GTTGRVKGVA LTHRNFVALT AAYHALTREV
201: EDELPPVVLF TVPLFHVFGF MMALRAVVLG ETIVLMERFD FGAMLRAVER YRVTFMPVSP PLVVAMAKSD EAARRDLSSL RVLGCGGAPL GRDVAERFAA
301: RFPHVEIVQG YGLTESTGGV AGTRTPEESK VFSSTGRLGS NTEAKIVDPT TGEALGPGQR GELWIRGPTI MKGYVGDAEA TAATLDSEGW LKTGDLCYFD
401: DDGFLFIVDR LKELIKYKAY QVPPAELEHI LVSHPGIADA AVIPGQAAYI PKFHISGSLC ITISFMGNII SHVKSHLYPD EEAGQIPMAF VVRQPGSMLS
501: DEEVMDFVGK QVAPYKRIRR IAFVSSIPKS PAGKILRREL INQAVSSPKS ML

Best Arabidopsis Sequence Match ( AT5G63380.1 )
(BLAST)

001: MLTKTNDSRL IDRSSGFDQR TGIYHSLRPS LSLPPIDQPL SAAEFALSLL LKSSPPATAG KNIEALTYLV NSSSGDNLTY GELLRRVRSL AVSLRERFPS
101: LASRNVAFIL SPSSLDIPVL YLALMSIGVV VSPANPIGSE SEVSHQVEVS EPVIAFATSQ TVKKLQSSSL PLGTVLMDST EFLSWLNRSD SSSVNPFQVQ
201: VNQSDPAAIL FSSGTTGRVK GVLLTHRNLI ASTAVSHQRT LQDPVNYDRV GLFSLPLFHV FGFMMMIRAI SLGETLVLLG RFELEAMFKA VEKYKVTGMP
301: VSPPLIVALV KSELTKKYDL RSLRSLGCGG APLGKDIAER FKQKFPDVDI VQGYGLTESS GPAASTFGPE EMVKYGSVGR ISENMEAKIV DPSTGESLPP
401: GKTGELWLRG PVIMKGYVGN EKASAETVDK EGWLKTGDLC YFDSEDFLYI VDRLKELIKY KAYQVPPVEL EQILHSNPDV IDAAVVPFPD EDAGEIPMAF
501: IVRKPGSNLN EAQIIDFVAK QVTPYKKVRR VAFINAIPKN PAGKILRREL TKIAVDGNAS KL

Arabidopsis Description

4CLL94-coumarate--CoA ligase-like 9 [Source:UniProtKB/Swiss-Prot;Acc:Q84P23]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.