Factsheet for GSMUA_Achr1P23450_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
vacuole 1
peroxisome 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	peroxisome	93.08	93.44
GSMUA_Achr7P05070_001	Banana	peroxisome	82.12	86.61
GSMUA_Achr9P22840_001	Banana	peroxisome	61.35	83.51
GSMUA_Achr4P12590_001	Banana	peroxisome	76.54	81.39
GSMUA_Achr4P05820_001	Banana	peroxisome	79.04	78.74
CDY53918	Canola	peroxisome	25.38	70.59
VIT_11s0052g01090.t01	Wine grape	peroxisome	73.85	70.07
CDY32418	Canola	peroxisome	24.42	69.4
PGSC0003DMT400074444	Potato	peroxisome	71.54	68.51
Os02t0177600-01	Rice	plasma membrane	72.88	68.41
TraesCS7D01G483400.1	Wheat	peroxisome	73.65	68.39
TraesCS6A01G151700.1	Wheat	peroxisome	71.73	68.31
TraesCS7A01G496200.1	Wheat	peroxisome	73.08	68.22
VIT_11s0052g01110.t01	Wine grape	peroxisome	70.58	68.09
TraesCS6B01G179900.2	Wheat	peroxisome	71.73	68.07
EER90150	Sorghum	peroxisome	72.88	68.04
Solyc06g068650.2.1	Tomato	peroxisome	70.96	67.96
Os06t0656500-01	Rice	peroxisome	72.88	67.8
TraesCS6D01G141700.1	Wheat	peroxisome	71.54	67.76
KRH02884	Soybean	peroxisome	71.15	67.64
HORVU6Hr1G030390.2	Barley	peroxisome	71.73	67.45
EES04623	Sorghum	peroxisome	71.54	67.03
KRH02885	Soybean	peroxisome	69.04	66.98
Solyc03g117870.2.1	Tomato	plastid	70.19	66.97
PGSC0003DMT400036886	Potato	peroxisome	69.81	66.61
KRH23700	Soybean	peroxisome	69.81	66.36
KRH09616	Soybean	mitochondrion, peroxisome	68.65	66.36
CDY43921	Canola	peroxisome	69.62	65.7
CDX87831	Canola	peroxisome	69.62	65.7
Os08t0448000-01	Rice	peroxisome	67.88	65.49
Bra030429.1-P	Field mustard	peroxisome	69.42	65.4
TraesCS2B01G171200.1	Wheat	peroxisome	67.88	65.37
TraesCS2D01G150400.1	Wheat	peroxisome	67.5	65.0
PGSC0003DMT400051216	Potato	peroxisome	71.15	64.8
Solyc07g008360.1.1	Tomato	peroxisome	70.77	64.79
TraesCS2A01G145800.1	Wheat	peroxisome	67.31	64.58
AT1G51680.1	Thale cress	peroxisome	69.62	64.53
AT3G21240.1	Thale cress	peroxisome	68.85	64.39
HORVU7Hr1G111130.3	Barley	peroxisome, plastid	72.69	64.07
CDY19568	Canola	peroxisome	67.69	63.77
Bra031266.1-P	Field mustard	peroxisome	67.5	63.59
Zm00001d015459_P003	Maize	peroxisome	71.73	63.54
PGSC0003DMT400037485	Potato	peroxisome	66.73	63.32
Os08t0245200-01	Rice	extracellular	68.46	63.12
Zm00001d032103_P001	Maize	peroxisome	67.31	63.06
EES15085	Sorghum	peroxisome	66.92	63.04
Solyc12g042460.1.1	Tomato	peroxisome	66.15	62.77
Zm00001d050224_P002	Maize	peroxisome	67.12	62.32
EES13602	Sorghum	peroxisome	67.5	61.47
GSMUA_Achr11P...	Banana	peroxisome, plastid	62.12	60.6
Zm00001d046915_P001	Maize	extracellular	74.04	60.25
KRH02886	Soybean	peroxisome, plastid	64.62	59.57
GSMUA_Achr2P18040_001	Banana	peroxisome, plastid	61.15	59.11
CDY48875	Canola	mitochondrion, plastid, vacuole	48.85	57.21
AT3G21230.1	Thale cress	peroxisome	61.73	56.32
CDX82208	Canola	peroxisome	61.92	56.29
CDY06431	Canola	peroxisome	59.62	56.06
CDY19570	Canola	peroxisome	60.0	55.81
Bra001819.1-P	Field mustard	peroxisome	61.54	55.75
CDY32416	Canola	peroxisome	61.54	55.75
Bra031263.1-P	Field mustard	peroxisome	59.23	55.7
CDY68920	Canola	peroxisome	59.23	55.7
Bra031265.1-P	Field mustard	peroxisome	59.81	55.64
KRH19011	Soybean	peroxisome	59.81	55.34
Bra001820.1-P	Field mustard	peroxisome	60.19	53.5
CDY06435	Canola	vacuole	41.35	48.31
CDY65966	Canola	peroxisome	29.04	42.78
CDY71190	Canola	peroxisome	30.38	42.7
HORVU0Hr1G002720.3	Barley	mitochondrion, plastid	43.65	41.58
GSMUA_Achr6P36020_001	Banana	peroxisome	37.69	39.6
GSMUA_Achr8P13230_001	Banana	peroxisome	38.08	39.36
GSMUA_Achr8P14210_001	Banana	peroxisome	37.31	39.11
GSMUA_Achr5P19650_001	Banana	peroxisome	35.77	38.27
GSMUA_Achr9P07820_001	Banana	peroxisome	13.27	37.91
GSMUA_AchrUn_...	Banana	peroxisome	35.19	37.27
GSMUA_Achr11P...	Banana	peroxisome, plasma membrane	23.08	35.29
GSMUA_Achr11P...	Banana	peroxisome	35.19	33.64
GSMUA_Achr5P25570_001	Banana	peroxisome	35.58	33.51
GSMUA_Achr1P13470_001	Banana	peroxisome	31.92	32.17
GSMUA_AchrUn_...	Banana	peroxisome	32.88	31.15

Protein Annotations

EnsemblPlants:GSMUA_Achr1P23450_001	EnsemblPlants:GSMUA_Achr1T23450_001	EnsemblPlantsGene:GSMUA_Achr1G23450_001	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
PANTHER:PTHR24096	PANTHER:PTHR24096:SF149	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	SUPFAM:SSF56801
UniParc:UPI000295A5DF	UniProt:M0S2F2	MapMan:7.8.1.1	MapMan:9.2.1.3	:	:

Description

Probable 4-coumarate--CoA ligase 3 [Source:GMGC_GENE;Acc:GSMUA_Achr1G23450_001]

Coordinates

chr1:-:17819088..17825166

Molecular Weight (calculated)

56542.6 Da

IEP (calculated)

5.378

GRAVY (calculated)

0.124

Length

520 amino acids

Sequence
(BLAST)

001: MGSIALPEET IFRSKLPDIE ITNDIPLHTY CFERLAEFAG RPCVIDGATG TVLTYAEVDA AARGFAAGLF SVGIGRGDVF MILLRNSPEF VIAFLAASYR
101: GAVATTANPF YTTGEIHKQA AGSGARLIIT ESCYVDKIRE FAGERDITIV TFDPDDVVAL PYSSGTTGLP KGVMLTHRSL ITSVAQQVDG DNPNLYLHQD
201: DVLLCVLPLF HIYSLNSVLL CGLRVGAAIL IMRRFEVGPL LELVQRHRVT IAPFVPPIVL EFVKSPLVDG YDLSSIRMVM SGAAPMGKEL EDKFMTKLPN
301: AQLGQGYGMT EAGPVLSMCL AFAKEPFEVK SGACGTVVRN AEMKIVDPAT GASLGSNQRG EICIRGAQIM KGYINDPEAT RNTIDKDGWL HTGDIGYVDD
401: DDEVFIVDRL KEIIKYKGFQ VAPAELEALL ITHPNIADAA VVPMKDEAAG EVPVAFVVRS NGSKISEDEI KQYISKQVVF YKRINKVFFT ETIPKAPSGK
501: ILRKDLRAKL AAQFPIGPFP

Best Arabidopsis Sequence Match ( AT3G21240.1 )
(BLAST)

001: MTTQDVIVND QNDQKQCSND VIFRSRLPDI YIPNHLPLHD YIFENISEFA AKPCLINGPT GEVYTYADVH VTSRKLAAGL HNLGVKQHDV VMILLPNSPE
101: VVLTFLAASF IGAITTSANP FFTPAEISKQ AKASAAKLIV TQSRYVDKIK NLQNDGVLIV TTDSDAIPEN CLRFSELTQS EEPRVDSIPE KISPEDVVAL
201: PFSSGTTGLP KGVMLTHKGL VTSVAQQVDG ENPNLYFNRD DVILCVLPMF HIYALNSIML CSLRVGATIL IMPKFEITLL LEQIQRCKVT VAMVVPPIVL
301: AIAKSPETEK YDLSSVRMVK SGAAPLGKEL EDAISAKFPN AKLGQGYGMT EAGPVLAMSL GFAKEPFPVK SGACGTVVRN AEMKILDPDT GDSLPRNKPG
401: EICIRGNQIM KGYLNDPLAT ASTIDKDGWL HTGDVGFIDD DDELFIVDRL KELIKYKGFQ VAPAELESLL IGHPEINDVA VVAMKEEDAG EVPVAFVVRS
501: KDSNISEDEI KQFVSKQVVF YKRINKVFFT DSIPKAPSGK ILRKDLRARL ANGLMN

Arabidopsis Description

4CL2Cinnamyl alcohol dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B1GUZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.