Factsheet for PGSC0003DMT400051216

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
vacuole 1
peroxisome 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008360.1.1	Tomato	peroxisome	95.45	95.95
VIT_11s0052g01090.t01	Wine grape	peroxisome	72.85	75.91
PGSC0003DMT400074444	Potato	peroxisome	71.45	75.14
KRH02884	Soybean	peroxisome	70.58	73.67
GSMUA_Achr9P22840_001	Banana	peroxisome	49.04	73.3
KRH02885	Soybean	peroxisome	68.65	73.13
PGSC0003DMT400036886	Potato	peroxisome	69.53	72.84
VIT_11s0052g01110.t01	Wine grape	peroxisome	68.65	72.73
GSMUA_Achr4P12590_001	Banana	peroxisome	62.17	72.6
GSMUA_AchrUn_...	Banana	peroxisome	65.32	72.01
GSMUA_Achr7P05070_001	Banana	peroxisome	61.47	71.2
GSMUA_Achr1P23450_001	Banana	peroxisome	64.8	71.15
GSMUA_Achr4P05820_001	Banana	peroxisome	64.8	70.88
PGSC0003DMT400037485	Potato	peroxisome	66.72	69.53
EER90150	Sorghum	peroxisome	62.52	64.09
TraesCS6A01G151700.1	Wheat	peroxisome	60.42	63.19
TraesCS6B01G179900.2	Wheat	peroxisome	60.6	63.14
TraesCS2D01G150400.1	Wheat	peroxisome	59.54	62.96
TraesCS2B01G171200.1	Wheat	peroxisome	59.54	62.96
Os08t0448000-01	Rice	peroxisome	59.37	62.89
TraesCS6D01G141700.1	Wheat	peroxisome	60.42	62.84
TraesCS7A01G496200.1	Wheat	peroxisome	61.3	62.84
Os02t0177600-01	Rice	plasma membrane	60.95	62.82
HORVU6Hr1G030390.2	Barley	peroxisome	60.77	62.75
Os06t0656500-01	Rice	peroxisome	61.12	62.43
TraesCS2A01G145800.1	Wheat	peroxisome	59.19	62.36
TraesCS7D01G483400.1	Wheat	peroxisome	61.12	62.32
EES04623	Sorghum	peroxisome	60.42	62.16
HORVU7Hr1G111130.3	Barley	peroxisome, plastid	62.17	60.17
EES15085	Sorghum	peroxisome	57.97	59.96
Zm00001d032103_P001	Maize	peroxisome	58.14	59.82
Zm00001d015459_P003	Maize	peroxisome	60.25	58.6
Os08t0245200-01	Rice	extracellular	57.44	58.16
PGSC0003DMT400008182	Potato	peroxisome	57.79	58.0
EES13602	Sorghum	peroxisome	56.57	56.57
Zm00001d050224_P002	Maize	peroxisome	55.17	56.25
Zm00001d046915_P001	Maize	extracellular	62.35	55.71
PGSC0003DMT400020978	Potato	peroxisome	38.53	40.67
HORVU0Hr1G002720.3	Barley	mitochondrion, plastid	38.35	40.11
PGSC0003DMT400075394	Potato	peroxisome, plastid	36.78	38.11
PGSC0003DMT400039281	Potato	peroxisome	33.98	35.14
PGSC0003DMT400024014	Potato	peroxisome	34.33	34.15

Protein Annotations

EntrezGene:102594991	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:7.8.1.1	MapMan:9.2.1.3	InterPro:AMP-bd_C
InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
UniProt:M1BRF7	PFAM:PF00501	PFAM:PF13193	EnsemblPlantsGene:PGSC0003DMG401019891	PGSC:PGSC0003DMG401019891	EnsemblPlants:PGSC0003DMT400051216
ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF149	SUPFAM:SSF56801	UniParc:UPI00029600AA	RefSeq:XP_006366955.1
SEG:seg	:	:	:	:	:

Description

AMP dependent CoA ligase [Source:PGSC_GENE;Acc:PGSC0003DMG401019891]

Coordinates

chr7:+:4874268..4878235

Molecular Weight (calculated)

63095.6 Da

IEP (calculated)

5.658

GRAVY (calculated)

0.013

Length

571 amino acids

Sequence
(BLAST)

001: MEEMINKLEI NHHDHDDQYI FRSKLPNIYI PNHLPLHKYC FENISQFSSR TCLINSATGA TYTYADVDLT AKRIALGLHK LGIEQRDVIM LLLPNSPEFV
101: FSFLGASFRG AISTTANPFY TPSEITKQAK ASNAKLIVTQ SCYVDKIKSY AEENRVKIVC VDDSLPLPDG CLSFAELLLT TTHQSDENNC TDDNIILSDS
201: VKILSDDVVA LPYSSGTTGL PKGVMLTHKG LVTSVAQQVD GENPNLYFHS EDVIMCVLPL FHIYSLNSIL LCGLRVGATI LIMQKFEIKG LMELVEKYKV
301: TIAPFVPPIV LAIAKSPLVD KYDLSSIRMI MSGAAPMGKE LEDTVRAKLP NAILGQGYGM TEAGPVLSMC LAFAKQRFDV KSGSCGTVVR NAEMKIVDSN
401: TGTLLPRNHA GEICIRGDQI MKGYLNNPKA TEETIDKEGW LHTGDIGYID DDDQVFIVDR LKELIKYKGY QVAPAELEAM LISNPNIIDA AVVPMKDEVA
501: GEVPIAFVVK ANGSNITEEE IKQYVSQQVI FYKRINRVFF IEEIPKAPSG KILRKDLRAK LAADLASSLL L

Best Arabidopsis Sequence Match ( AT1G51680.1 )
(BLAST)

001: MAPQEQAVSQ VMEKQSNNNN SDVIFRSKLP DIYIPNHLSL HDYIFQNISE FATKPCLING PTGHVYTYSD VHVISRQIAA NFHKLGVNQN DVVMLLLPNC
101: PEFVLSFLAA SFRGATATAA NPFFTPAEIA KQAKASNTKL IITEARYVDK IKPLQNDDGV VIVCIDDNES VPIPEGCLRF TELTQSTTEA SEVIDSVEIS
201: PDDVVALPYS SGTTGLPKGV MLTHKGLVTS VAQQVDGENP NLYFHSDDVI LCVLPMFHIY ALNSIMLCGL RVGAAILIMP KFEINLLLEL IQRCKVTVAP
301: MVPPIVLAIA KSSETEKYDL SSIRVVKSGA APLGKELEDA VNAKFPNAKL GQGYGMTEAG PVLAMSLGFA KEPFPVKSGA CGTVVRNAEM KIVDPDTGDS
401: LSRNQPGEIC IRGHQIMKGY LNNPAATAET IDKDGWLHTG DIGLIDDDDE LFIVDRLKEL IKYKGFQVAP AELEALLIGH PDITDVAVVA MKEEAAGEVP
501: VAFVVKSKDS ELSEDDVKQF VSKQVVFYKR INKVFFTESI PKAPSGKILR KDLRAKLANG L

Arabidopsis Description

4CL14-coumarate-CoA ligase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1P8SNN0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.