Factsheet for PGSC0003DMT400020978

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
vacuole 1
peroxisome 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069050.1.1	Tomato	peroxisome	93.72	94.24
KRH25085	Soybean	peroxisome	42.88	76.07
CDY39155	Canola	peroxisome	71.53	71.4
Bra029561.1-P	Field mustard	peroxisome	71.16	71.03
CDY46375	Canola	peroxisome	71.16	71.03
VIT_06s0061g00450.t01	Wine grape	peroxisome	70.61	70.22
AT4G05160.1	Thale cress	peroxisome	69.32	68.93
CDY46376	Canola	peroxisome	68.58	68.83
HORVU4Hr1G072130.2	Barley	mitochondrion, peroxisome	28.84	68.42
CDY39153	Canola	peroxisome	67.65	67.9
KRH22842	Soybean	peroxisome, plastid	65.8	65.93
KRH30593	Soybean	peroxisome	65.62	63.62
Bra029560.1-P	Field mustard	peroxisome	61.0	61.8
GSMUA_Achr5P19650_001	Banana	peroxisome	54.53	60.7
GSMUA_Achr8P14210_001	Banana	peroxisome	54.34	59.27
Os03t0152400-01	Rice	plasma membrane	58.78	57.61
KXG40154	Sorghum	peroxisome	58.78	57.5
Zm00001d027711_P003	Maize	extracellular	58.6	57.12
TraesCS4D01G268400.1	Wheat	peroxisome	57.12	56.49
TraesCS4A01G036200.1	Wheat	peroxisome	57.3	56.47
TraesCS4B01G269200.1	Wheat	peroxisome	57.49	56.04
Zm00001d033055_P001	Maize	peroxisome	56.19	55.27
OQU91476	Sorghum	peroxisome	56.01	54.4
PGSC0003DMT400074444	Potato	peroxisome	41.77	41.62
PGSC0003DMT400075394	Potato	peroxisome, plastid	41.22	40.47
PGSC0003DMT400036886	Potato	peroxisome	40.48	40.18
PGSC0003DMT400024014	Potato	peroxisome	42.33	39.9
PGSC0003DMT400039281	Potato	peroxisome	40.67	39.86
PGSC0003DMT400037485	Potato	peroxisome	40.3	39.78
PGSC0003DMT400008182	Potato	peroxisome	40.85	38.84
PGSC0003DMT400051216	Potato	peroxisome	40.67	38.53
HORVU4Hr1G072150.1	Barley	peroxisome	35.12	34.11

Protein Annotations

EntrezGene:102597265	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:35.1	InterPro:AMP-bd_C	InterPro:AMP-binding_CS
InterPro:AMP-dep_Synth/Lig	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	UniProt:M1AEE2	PFAM:PF00501	PFAM:PF13193	EnsemblPlantsGene:PGSC0003DMG400008122
PGSC:PGSC0003DMG400008122	EnsemblPlants:PGSC0003DMT400020978	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF302	SUPFAM:SSF56801
TMHMM:TMhelix	UniParc:UPI0002951B5A	RefSeq:XP_006340129.1	SEG:seg	:	:

Description

AMP dependent CoA ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400008122]

Coordinates

chr11:+:40963142..40969307

Molecular Weight (calculated)

59440.4 Da

IEP (calculated)

9.307

GRAVY (calculated)

0.015

Length

541 amino acids

Sequence
(BLAST)

001: MEKSGYGRDG IYRSLRPPLF YPKDENLSMV SFLFRNSSSY PEKPAFFDAD NGETLSFSQF KSMVSRISHG LIHQMGIKKN DVVLIFAPNS VQFPLSFFGV
101: IAIGAIATTV NPMYTVSELS KQIKDCKPKL IITSPELFDK VNRFNLPILL LGHPGNSNSN NSGVVRFTEL VGKAGYFDLD KTVIKQTDTA ALLYSSGTTG
201: VSKGVVLTHR NFISAALMVT SDQELAGEMH NVYLCILPMF HVFGLAVIMY AQLQRGNAIV SMAKFDLETL LKNVDKYRVS HLWIVPPIVL ALAKNPVVKK
301: YNLMSIKQIG SGAAPLGKDL MEDCAKNFPQ AVVMQGYGMT ETCGIVSMEN VYAGPRHTGS AGTLASGVEA QIVSVDKSKP LPPGQLGEIW VRGPNMMKGY
401: FNNPQATKLT IDNQGWVHTG DLGYFTEDGL LYVVDRIKEL IKYKGFQVAP AELEGLLVSH PEILDAVVIP FPDAEAGEVP VAYVVRSPNS SLTEENVQKF
501: IADQVAPFKR LKKVTFINSV PKSAAGKILR RELIDKVRSK I

Best Arabidopsis Sequence Match ( AT4G05160.1 )
(BLAST)

001: MEKSGYGRDG IYRSLRPTLV LPKDPNTSLV SFLFRNSSSY PSKLAIADSD TGDSLTFSQL KSAVARLAHG FHRLGIRKND VVLIFAPNSY QFPLCFLAVT
101: AIGGVFTTAN PLYTVNEVSK QIKDSNPKII ISVNQLFDKI KGFDLPVVLL GSKDTVEIPP GSNSKILSFD NVMELSEPVS EYPFVEIKQS DTAALLYSSG
201: TTGTSKGVEL THGNFIAASL MVTMDQDLMG EYHGVFLCFL PMFHVFGLAV ITYSQLQRGN ALVSMARFEL ELVLKNIEKF RVTHLWVVPP VFLALSKQSI
301: VKKFDLSSLK YIGSGAAPLG KDLMEECGRN IPNVLLMQGY GMTETCGIVS VEDPRLGKRN SGSAGMLAPG VEAQIVSVET GKSQPPNQQG EIWVRGPNMM
401: KGYLNNPQAT KETIDKKSWV HTGDLGYFNE DGNLYVVDRI KELIKYKGFQ VAPAELEGLL VSHPDILDAV VIPFPDEEAG EVPIAFVVRS PNSSITEQDI
501: QKFIAKQVAP YKRLRRVSFI SLVPKSAAGK ILRRELVQQV RSKM

Arabidopsis Description

4CLL74-coumarate--CoA ligase-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0X9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.