Factsheet for PGSC0003DMT400008182

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 3
peroxisome 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g097030.2.1	Tomato	peroxisome	97.01	96.84
VIT_16s0039g02040.t01	Wine grape	peroxisome	72.76	75.55
KRH77759	Soybean	peroxisome	71.88	73.69
GSMUA_Achr11P...	Banana	peroxisome, plastid	65.73	70.17
KRH27719	Soybean	peroxisome	65.73	69.39
GSMUA_Achr2P18040_001	Banana	peroxisome, plastid	64.67	68.4
EES05680	Sorghum	peroxisome	66.26	66.61
AT1G65060.1	Thale cress	peroxisome	65.55	66.49
Os02t0697400-01	Rice	plasma membrane	65.91	65.91
Bra004109.1-P	Field mustard	peroxisome	63.97	65.47
CDY07442	Canola	peroxisome	63.97	65.47
CDY39293	Canola	peroxisome	63.8	65.17
KRH29003	Soybean	plastid	63.62	64.18
TraesCS6D01G248000.1	Wheat	peroxisome, plasma membrane	63.97	64.08
TraesCS6A01G266700.1	Wheat	peroxisome	64.32	63.87
TraesCS6B01G294100.1	Wheat	peroxisome	64.15	63.7
HORVU0Hr1G018190.2	Barley	peroxisome	63.44	63.44
PGSC0003DMT400074444	Potato	peroxisome	59.4	62.25
PGSC0003DMT400036886	Potato	peroxisome	58.35	60.92
PGSC0003DMT400037485	Potato	peroxisome	57.47	59.67
PGSC0003DMT400051216	Potato	peroxisome	58.0	57.79
Zm00001d051529_P001	Maize	peroxisome, plasma membrane	61.16	54.89
PGSC0003DMT400020978	Potato	peroxisome	38.84	40.85
PGSC0003DMT400075394	Potato	peroxisome, plastid	36.03	37.21
PGSC0003DMT400039281	Potato	peroxisome	33.74	34.78
PGSC0003DMT400024014	Potato	peroxisome	31.99	31.71

Protein Annotations

EntrezGene:102581073	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:7.8.1.1	MapMan:9.2.1.3	InterPro:AMP-bd_C
InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	UniProt:M0ZU79	PFAM:PF00501	PFAM:PF13193
EnsemblPlantsGene:PGSC0003DMG400003155	PGSC:PGSC0003DMG400003155	EnsemblPlants:PGSC0003DMT400008182	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF169
SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI0002960FE3	RefSeq:XP_006347575.1	SEG:seg	:

Description

4-coumarate:CoA ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400003155]

Coordinates

chr3:+:46757152..46762127

Molecular Weight (calculated)

61828.7 Da

IEP (calculated)

5.623

GRAVY (calculated)

0.068

Length

569 amino acids

Sequence
(BLAST)

001: MVSVATVDAQ KAEVLSSVIS PNQNQSSEEL HVFRSKLPDI SISNNIPLHV YLFERLSEFE ERTCLIAGNS GETFTFGETH LICQKIAAGL TKVGIKKGDV
101: IMTFLQNCSE FVFTFLASSM IGAVITTANP FYTKSEAFKQ LKASNAKLIV TQSQYVDKFR DPAENDPKIG EDFSVVTIDD PPENCLHFSV LSEAKAEDMP
201: KGVVIHPDDP VALPFSSGTT GLPKGVILTH KSLITGVAQL VDGDNPNFYL KHDDVVLCVL PLFHIFALNS VLLVSLRAGA SVLLMQKFEI SALLELIQKH
301: RVSVAAVVPP LVLALAKNPM VDSFDLSSIR LVMSGAAPLG KELEEALHRR VPQAIFGQGY GMTEAGPVVT MCPAFAKQPL STKSGSCGSV VRNADLKVVD
401: PENGGSLDRN QPGEICIRGS QIMKGYLNDD EATARTIDVD GWLHTGDIGY VDDDDEIYIV DRVKELIKFK GFQVPPAELE SLLISHPEIA DAAVVPQKDG
501: AAGEVPVAFV VRSAQGFDLT EEAIKEFIAK QVVFYKKLHK VYFIHAIPKS PSGKILRKDL RAKLAATPQ

Best Arabidopsis Sequence Match ( AT1G65060.1 )
(BLAST)

001: MITAALHEPQ IHKPTDTSVV SDDVLPHSPP TPRIFRSKLP DIDIPNHLPL HTYCFEKLSS VSDKPCLIVG STGKSYTYGE THLICRRVAS GLYKLGIRKG
101: DVIMILLQNS AEFVFSFMGA SMIGAVSTTA NPFYTSQELY KQLKSSGAKL IITHSQYVDK LKNLGENLTL ITTDEPTPEN CLPFSTLITD DETNPFQETV
201: DIGGDDAAAL PFSSGTTGLP KGVVLTHKSL ITSVAQQVDG DNPNLYLKSN DVILCVLPLF HIYSLNSVLL NSLRSGATVL LMHKFEIGAL LDLIQRHRVT
301: IAALVPPLVI ALAKNPTVNS YDLSSVRFVL SGAAPLGKEL QDSLRRRLPQ AILGQGYGMT EAGPVLSMSL GFAKEPIPTK SGSCGTVVRN AELKVVHLET
401: RLSLGYNQPG EICIRGQQIM KEYLNDPEAT SATIDEEGWL HTGDIGYVDE DDEIFIVDRL KEVIKFKGFQ VPPAELESLL INHHSIADAA VVPQNDEVAG
501: EVPVAFVVRS NGNDITEEDV KEYVAKQVVF YKRLHKVFFV ASIPKSPSGK ILRKDLKAKL C

Arabidopsis Description

4CL34-coumarate--CoA ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S777]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.