Factsheet for PGSC0003DMT400024014

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, plasma membrane
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076300.2.1	Tomato	peroxisome	95.82	95.82
VIT_02s0109g00250.t01	Wine grape	peroxisome, plastid	63.94	64.27
KRH74284	Soybean	peroxisome	59.93	62.21
AT4G19010.1	Thale cress	peroxisome, plastid	59.93	60.78
GSMUA_Achr11P...	Banana	peroxisome, plasma membrane	35.19	59.41
Bra013369.1-P	Field mustard	peroxisome, plastid	58.71	58.81
GSMUA_Achr11P...	Banana	peroxisome	52.26	55.15
KRH39635	Soybean	cytosol, golgi, peroxisome	46.52	53.61
TraesCS1D01G200200.1	Wheat	peroxisome	50.52	51.06
Os10t0578950-00	Rice	peroxisome	49.48	50.9
TraesCS1A01G196700.1	Wheat	peroxisome	50.0	50.53
KXG38810	Sorghum	peroxisome	50.0	50.09
Os08t0143300-00	Rice	peroxisome, plastid	51.57	50.08
TraesCS1B01G211300.1	Wheat	peroxisome	50.35	49.23
Zm00001d030132_P002	Maize	peroxisome	50.87	45.91
HORVU1Hr1G051190.2	Barley	peroxisome	50.35	45.44
CDX99401	Canola	peroxisome	52.09	44.76
PGSC0003DMT400075394	Potato	peroxisome, plastid	41.46	43.19
PGSC0003DMT400020978	Potato	peroxisome	39.9	42.33
PGSC0003DMT400039281	Potato	peroxisome	37.46	38.95
PGSC0003DMT400074444	Potato	peroxisome	33.8	35.73
PGSC0003DMT400037485	Potato	peroxisome	33.62	35.22
PGSC0003DMT400036886	Potato	peroxisome	33.28	35.05
PGSC0003DMT400051216	Potato	peroxisome	34.15	34.33
PGSC0003DMT400008182	Potato	peroxisome	31.71	31.99

Protein Annotations

EntrezGene:102589793	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:35.1	InterPro:AMP-bd_C	InterPro:AMP-dep_Synth/Lig
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	UniProt:M1AJB1	PFAM:PF00501	PFAM:PF13193	EnsemblPlantsGene:PGSC0003DMG401009291	PGSC:PGSC0003DMG401009291
EnsemblPlants:PGSC0003DMT400024014	PANTHER:PTHR24096	PANTHER:PTHR24096:SF261	SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI0002959C6B
RefSeq:XP_006352919.1	SEG:seg	:	:	:	:

Description

4-coumarate-coa ligase [Source:PGSC_GENE;Acc:PGSC0003DMG401009291]

Coordinates

chr8:-:48855542..48860379

Molecular Weight (calculated)

62632.6 Da

IEP (calculated)

5.358

GRAVY (calculated)

0.107

Length

574 amino acids

Sequence
(BLAST)

001: MATFLKTQLN SHVIESEESG NGEVEKNPSK TLSFPFWYCA ETGIYSSKYP SIKLPEDPFL DVVSFIFSHK NGGVSALVDS TSGISISYSE LYPMVKSMAS
101: GLHQRGVSQG DVVLILLPNS IYFPVILLGV LALGAIATTM NPLSNLLEIK KQALDCCVTL AFSTCDKVDK LSTLDIPVIG VPEILVSGSN CSESSVFYEL
201: ISCDPNWDSR PKISQQDTAA ILYSSGTTGV GKGVILTHGN FIAMVETFVR FEASQYEYSS SENVYLDVTP MFHVYGLSLF VMGLLSLGTT IVVMSKFDAD
301: EMVKAIERYK VTHFPLVPPL LMALTRRAKD GALSSMKSLK QVSCGAAPVN PKSIEDFVHT LPDVDFIQGY GMTESTAIGT RGYNTEKLHN YSSVGLLAPN
401: MQAKVVDWIT GSTLAPDCMG ELWLCGPGVM KGYLNNLEAT KSTIDDNGYL HTGDIAYFDE EGYLYVIDRL KETIKYKGFQ IAPADLEAVL VSHPDIIDAA
501: VIGARDEEAG EIPVAFVVKR DGCAVSQTDV INFVTKQVAP FKKIRKVYFR ASIPRSAAGK ILRKELRNLL TSKL

Best Arabidopsis Sequence Match ( AT4G19010.1 )
(BLAST)

001: MAATHLHIPP NPKTQTSHQN PPFWFSSKTG IYTSKFPSLH LPVDPNLDAV SALFSHKHHG DTALIDSLTG FSISHTELQI MVQSMAAGIY HVLGVRQGDV
101: VSLVLPNSVY FPMIFLSLIS LGAIVTTMNP SSSLGEIKKQ VSECSVGLAF TSTENVEKLS SLGVSVISVS ESYDFDSIRI ENPKFYSIMK ESFGFVPKPL
201: IKQDDVAAIM YSSGTTGASK GVLLTHRNLI ASMELFVRFE ASQYEYPGSS NVYLAALPLC HIYGLSLFVM GLLSLGSTIV VMKRFDASDV VNVIERFKIT
301: HFPVVPPMLM ALTKKAKGVC GEVFKSLKQV SSGAAPLSRK FIEDFLQTLP HVDLIQGYGM TESTAVGTRG FNSEKLSRYS SVGLLAPNMQ AKVVDWSSGS
401: FLPPGNRGEL WIQGPGVMKG YLNNPKATQM SIVEDSWLRT GDIAYFDEDG YLFIVDRIKE IIKYKGFQIA PADLEAVLVS HPLIIDAAVT AAPNEECGEI
501: PVAFVVRRQE TTLSEEDVIS YVASQVAPYR KVRKVVMVNS IPKSPTGKIL RKELKRILTN SVSSRL

Arabidopsis Description

4CLL64-coumarate--CoA ligase-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q84P24]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.