Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- peroxisome 3
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013369.1-P | Field mustard | peroxisome, plastid | 86.22 | 85.17 |
| CDX99401 | Canola | peroxisome | 75.27 | 63.77 |
| PGSC0003DMT400024014 | Potato | peroxisome | 60.78 | 59.93 |
| KRH74284 | Soybean | peroxisome | 58.48 | 59.86 |
| Solyc08g076300.2.1 | Tomato | peroxisome | 60.42 | 59.58 |
| VIT_02s0109g00250.t01 | Wine grape | peroxisome, plastid | 59.54 | 59.02 |
| GSMUA_Achr11P... | Banana | peroxisome, plasma membrane | 34.81 | 57.94 |
| GSMUA_Achr11P... | Banana | peroxisome | 52.3 | 54.41 |
| KXG38810 | Sorghum | peroxisome | 52.65 | 52.01 |
| Os10t0578950-00 | Rice | peroxisome | 51.06 | 51.79 |
| TraesCS1D01G200200.1 | Wheat | peroxisome | 51.59 | 51.41 |
| TraesCS1A01G196700.1 | Wheat | peroxisome | 50.88 | 50.7 |
| KRH39635 | Soybean | cytosol, golgi, peroxisome | 44.17 | 50.2 |
| TraesCS1B01G211300.1 | Wheat | peroxisome | 51.94 | 50.09 |
| Os08t0143300-00 | Rice | peroxisome, plastid | 51.59 | 49.41 |
| Zm00001d030132_P002 | Maize | peroxisome | 51.94 | 46.23 |
| HORVU1Hr1G051190.2 | Barley | peroxisome | 51.77 | 46.07 |
| AT4G05160.1 | Thale cress | peroxisome | 38.34 | 39.89 |
| AT1G20480.1 | Thale cress | peroxisome | 39.75 | 39.82 |
| AT1G20510.1 | Thale cress | plastid | 38.34 | 39.74 |
| AT1G20500.1 | Thale cress | plastid | 38.34 | 39.45 |
| AT5G63380.1 | Thale cress | peroxisome | 38.34 | 38.61 |
| AT5G38120.1 | Thale cress | plastid | 36.57 | 37.64 |
| AT1G65060.1 | Thale cress | peroxisome | 35.34 | 35.65 |
| AT1G51680.1 | Thale cress | peroxisome | 34.98 | 35.29 |
| AT3G21240.1 | Thale cress | peroxisome | 34.45 | 35.07 |
| AT3G21230.1 | Thale cress | peroxisome | 34.81 | 34.56 |
| AT1G20490.2 | Thale cress | peroxisome | 26.68 | 33.78 |
| AT1G62940.1 | Thale cress | peroxisome | 32.33 | 33.76 |
Protein Annotations
| Gene3D:3.30.300.30 | Gene3D:3.40.50.12780 | MapMan:35.1 | EntrezGene:827639 | ProteinID:AEE84125.1 | EMBL:AK117362 |
| InterPro:AMP-bd_C | InterPro:AMP-binding_CS | InterPro:AMP-dep_Synth/Lig | ArrayExpress:AT4G19010 | EnsemblPlantsGene:AT4G19010 | RefSeq:AT4G19010 |
| TAIR:AT4G19010 | RefSeq:AT4G19010-TAIR-G | EnsemblPlants:AT4G19010.1 | TAIR:AT4G19010.1 | EMBL:AY250834 | EMBL:AY376733 |
| Unigene:At.43659 | EMBL:BT005912 | ProteinID:CAA16758.1 | ProteinID:CAB78903.1 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005777 | GO:GO:0006744 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016405 | GO:GO:0016874 | RefSeq:NP_193636.1 | PFAM:PF00501 | PFAM:PF13193 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00455 | PANTHER:PTHR24096 | PANTHER:PTHR24096:SF261 |
| UniProt:Q84P24 | SUPFAM:SSF56801 | UniParc:UPI00000A62E9 | SEG:seg | : | : |
Description
4CLL64-coumarate--CoA ligase-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q84P24]
Coordinates
chr4:-:10411466..10414324
Molecular Weight (calculated)
61960.2 Da
IEP (calculated)
8.289
GRAVY (calculated)
0.111
Length
566 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATHLHIPP NPKTQTSHQN PPFWFSSKTG IYTSKFPSLH LPVDPNLDAV SALFSHKHHG DTALIDSLTG FSISHTELQI MVQSMAAGIY HVLGVRQGDV
101: VSLVLPNSVY FPMIFLSLIS LGAIVTTMNP SSSLGEIKKQ VSECSVGLAF TSTENVEKLS SLGVSVISVS ESYDFDSIRI ENPKFYSIMK ESFGFVPKPL
201: IKQDDVAAIM YSSGTTGASK GVLLTHRNLI ASMELFVRFE ASQYEYPGSS NVYLAALPLC HIYGLSLFVM GLLSLGSTIV VMKRFDASDV VNVIERFKIT
301: HFPVVPPMLM ALTKKAKGVC GEVFKSLKQV SSGAAPLSRK FIEDFLQTLP HVDLIQGYGM TESTAVGTRG FNSEKLSRYS SVGLLAPNMQ AKVVDWSSGS
401: FLPPGNRGEL WIQGPGVMKG YLNNPKATQM SIVEDSWLRT GDIAYFDEDG YLFIVDRIKE IIKYKGFQIA PADLEAVLVS HPLIIDAAVT AAPNEECGEI
501: PVAFVVRRQE TTLSEEDVIS YVASQVAPYR KVRKVVMVNS IPKSPTGKIL RKELKRILTN SVSSRL
101: VSLVLPNSVY FPMIFLSLIS LGAIVTTMNP SSSLGEIKKQ VSECSVGLAF TSTENVEKLS SLGVSVISVS ESYDFDSIRI ENPKFYSIMK ESFGFVPKPL
201: IKQDDVAAIM YSSGTTGASK GVLLTHRNLI ASMELFVRFE ASQYEYPGSS NVYLAALPLC HIYGLSLFVM GLLSLGSTIV VMKRFDASDV VNVIERFKIT
301: HFPVVPPMLM ALTKKAKGVC GEVFKSLKQV SSGAAPLSRK FIEDFLQTLP HVDLIQGYGM TESTAVGTRG FNSEKLSRYS SVGLLAPNMQ AKVVDWSSGS
401: FLPPGNRGEL WIQGPGVMKG YLNNPKATQM SIVEDSWLRT GDIAYFDEDG YLFIVDRIKE IIKYKGFQIA PADLEAVLVS HPLIIDAAVT AAPNEECGEI
501: PVAFVVRRQE TTLSEEDVIS YVASQVAPYR KVRKVVMVNS IPKSPTGKIL RKELKRILTN SVSSRL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.