Factsheet for AT1G20500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
peroxisome 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012232.1-P	Field mustard	peroxisome, plastid	82.91	83.06
CDY01370	Canola	peroxisome, plastid	82.91	82.91
AT1G20490.2	Thale cress	peroxisome	64.91	79.87
CDY31474	Canola	peroxisome	77.82	73.79
AT5G38120.1	Thale cress	plastid	73.45	73.45
AT1G20510.1	Thale cress	plastid	68.73	69.23
VIT_18s0001g00290.t01	Wine grape	peroxisome	65.45	65.57
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	64.91	65.03
KRH17509	Soybean	peroxisome, plastid	64.73	64.85
Solyc12g094520.1.1	Tomato	plastid	63.09	62.98
PGSC0003DMT400075394	Potato	peroxisome, plastid	63.09	62.98
GSMUA_Achr8P13230_001	Banana	peroxisome	56.73	62.03
AT1G20480.1	Thale cress	peroxisome	60.73	59.12
HORVU4Hr1G081940.3	Barley	peroxisome	57.45	57.45
Zm00001d027519_P001	Maize	plasma membrane	57.45	57.35
TraesCS4D01G323500.1	Wheat	plastid	57.27	57.17
TraesCS5A01G498800.1	Wheat	peroxisome	57.27	57.07
EER95569	Sorghum	peroxisome	57.27	56.96
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	56.91	56.7
Os03t0132000-01	Rice	plasma membrane	56.55	56.34
AT5G63380.1	Thale cress	peroxisome	44.36	43.42
AT4G05160.1	Thale cress	peroxisome	42.18	42.65
AT4G19010.1	Thale cress	peroxisome, plastid	39.45	38.34
AT1G51680.1	Thale cress	peroxisome	35.82	35.12
AT3G21230.1	Thale cress	peroxisome	36.18	34.91
AT1G65060.1	Thale cress	peroxisome	35.09	34.4
AT3G21240.1	Thale cress	peroxisome	34.55	34.17
AT1G62940.1	Thale cress	peroxisome	32.18	32.66

Protein Annotations

MapMan:11.7.1.7	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	EntrezGene:838638	ProteinID:AAF79612.1	ProteinID:AEE29979.1
InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ArrayExpress:AT1G20500	EnsemblPlantsGene:AT1G20500	RefSeq:AT1G20500
TAIR:AT1G20500	RefSeq:AT1G20500-TAIR-G	EnsemblPlants:AT1G20500.1	TAIR:AT1G20500.1	Unigene:At.43932	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016874	RefSeq:NP_173474.5	UniProt:P0C5B6	PFAM:PF00501	PFAM:PF13193
ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF186	SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI0000162E3A
SEG:seg	:	:	:	:	:

Description

4CLL44-coumarate--CoA ligase-like 4 [Source:UniProtKB/Swiss-Prot;Acc:P0C5B6]

Coordinates

chr1:-:7100502..7102915

Molecular Weight (calculated)

60524.0 Da

IEP (calculated)

8.427

GRAVY (calculated)

-0.083

Length

550 amino acids

Sequence
(BLAST)

001: MAYPERSLIV DPRSGFCKSN STFYSKRQPL SLPPNLSRDV TTFISSQPHR GKTAFIDAAT GQCLTFSDLW RAVDRVADCL YHEVGIRRGD VVLILSPNSI
101: FIPVVCLSVM SLGAVFTTAN TLNTSGEISK QIADSNPTLV FTTRQLAPKL PVAISVVLTD DEVYQELTSA IRVVGILSEM VKKEPSGQRV RDRVNQDDTA
201: MMLYSSGTTG PSKGVISSHR NLTAHVARFI SDNLKRDDIF ICTVPMFHTY GLLTFAMGTV ALGSTVVILR RFQLHDMMDA VEKHRATALA LAPPVLVAMI
301: NDADLIKAKY DLSSLKTVRC GGAPLSKEVT EGFLEKYPTV DILQGYALTE SNGGGAFTNS AEESRRYGTA GTLTSDVEAR IVDPNTGRFM GINQTGELWL
401: KGPSISKGYF KNQEATNETI NLEGWLKTGD LCYIDEDGFL FVVDRLKELI KYKGYQVPPA ELEALLITHP DILDAAVIPF PDKEAGQYPM AYVVRKHESN
501: LSEKQVIDFI SKQVAPYKKI RKVSFINSIP KTASGKTLRK DLIKLATSKL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.