Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 1
- peroxisome 3
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31472 | Canola | peroxisome | 78.76 | 86.58 |
| Bra025822.1-P | Field mustard | peroxisome | 82.83 | 86.19 |
| CDY29527 | Canola | peroxisome | 80.53 | 85.85 |
| Bra016466.1-P | Field mustard | peroxisome | 80.18 | 82.66 |
| CDX96638 | Canola | peroxisome | 76.99 | 82.54 |
| CDY33627 | Canola | peroxisome | 76.46 | 77.56 |
| AT1G20510.1 | Thale cress | plastid | 63.72 | 65.93 |
| VIT_18s0001g00290.t01 | Wine grape | peroxisome | 62.12 | 63.93 |
| KRH17509 | Soybean | peroxisome, plastid | 60.71 | 62.48 |
| Solyc12g094520.1.1 | Tomato | plastid | 60.35 | 61.89 |
| PGSC0003DMT400075394 | Potato | peroxisome, plastid | 60.18 | 61.71 |
| AT1G20500.1 | Thale cress | plastid | 59.12 | 60.73 |
| GSMUA_Achr8P13230_001 | Banana | peroxisome | 53.63 | 60.24 |
| VIT_18s0001g00280.t01 | Wine grape | peroxisome, plastid | 58.05 | 59.74 |
| TraesCS4D01G323500.1 | Wheat | plastid | 55.93 | 57.35 |
| TraesCS5A01G498800.1 | Wheat | peroxisome | 55.93 | 57.25 |
| TraesCS4B01G326800.1 | Wheat | peroxisome, plastid | 55.93 | 57.25 |
| Zm00001d027519_P001 | Maize | plasma membrane | 55.75 | 57.17 |
| HORVU4Hr1G081940.3 | Barley | peroxisome | 55.58 | 57.09 |
| AT5G38120.1 | Thale cress | plastid | 55.4 | 56.91 |
| EER95569 | Sorghum | peroxisome | 55.58 | 56.78 |
| Os03t0132000-01 | Rice | plasma membrane | 55.4 | 56.7 |
| AT1G20490.2 | Thale cress | peroxisome | 43.01 | 54.36 |
| AT5G63380.1 | Thale cress | peroxisome | 43.72 | 43.95 |
| AT4G05160.1 | Thale cress | peroxisome | 39.29 | 40.81 |
| AT4G19010.1 | Thale cress | peroxisome, plastid | 39.82 | 39.75 |
| AT1G62940.1 | Thale cress | peroxisome | 35.75 | 37.27 |
| AT3G21240.1 | Thale cress | peroxisome | 36.46 | 37.05 |
| AT1G51680.1 | Thale cress | peroxisome | 36.11 | 36.36 |
| AT1G65060.1 | Thale cress | peroxisome | 35.22 | 35.47 |
| AT3G21230.1 | Thale cress | peroxisome | 34.51 | 34.21 |
Protein Annotations
| MapMan:11.7.1.7 | Gene3D:3.30.300.30 | Gene3D:3.40.50.12780 | EntrezGene:838636 | ProteinID:AAF79612.1 | ProteinID:AEE29977.1 |
| InterPro:AMP-bd_C | InterPro:AMP-binding_CS | InterPro:AMP-dep_Synth/Lig | ArrayExpress:AT1G20480 | EnsemblPlantsGene:AT1G20480 | RefSeq:AT1G20480 |
| TAIR:AT1G20480 | RefSeq:AT1G20480-TAIR-G | EnsemblPlants:AT1G20480.1 | TAIR:AT1G20480.1 | EMBL:AY250833 | Unigene:At.41707 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005777 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016874 | RefSeq:NP_173472.1 | PFAM:PF00501 | PFAM:PF13193 |
| PO:PO:0000084 | PO:PO:0000293 | ScanProsite:PS00455 | PANTHER:PTHR24096 | PANTHER:PTHR24096:SF186 | UniProt:Q84P25 |
| SUPFAM:SSF56801 | TMHMM:TMhelix | UniParc:UPI0000162E38 | SEG:seg | : | : |
Description
4CLL24-coumarate--CoA ligase-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84P25]
Coordinates
chr1:-:7094833..7097147
Molecular Weight (calculated)
61441.7 Da
IEP (calculated)
9.150
GRAVY (calculated)
0.046
Length
565 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVKHGVDGD GSEIESRTLA VDRKSGFCES TSIFYSKREP MALPPNQFLD VTSFIASQPH RGKTVFVDAV TGRRLSFPEL WLGVERVAGC LYALGVRKGN
101: VVIILSPNSI LFPIVSLSVM SLGAIITTAN PINTSDEISK QIGDSRPVLA FTTCKLVSKL AAASNFNLPV VLMDDYHVPS QSYGDRVKLV GRLETMIETE
201: PSESRVKQRV NQDDTAALLY SSGTTGTSKG VMLSHRNLIA LVQAYRARFG LEQRTICTIP MCHIFGFGGF ATGLIALGWT IVVLPKFDMA KLLSAVETHR
301: SSYLSLVPPI VVAMVNGANE INSKYDLSSL HTVVAGGAPL SREVTEKFVE NYPKVKILQG YGLTESTAIA ASMFNKEETK RYGASGLLAP NVEGKIVDPD
401: TGRVLGVNQT GELWIRSPTV MKGYFKNKEA TASTIDSEGW LKTGDLCYID GDGFVFVVDR LKELIKCNGY QVAPAELEAL LLAHPEIADA AVIPIPDMKA
501: GQYPMAYIVR KVGSNLSESE IMGFVAKQVS PYKKIRKVTF LASIPKNPSG KILRRELTKL TTSKL
101: VVIILSPNSI LFPIVSLSVM SLGAIITTAN PINTSDEISK QIGDSRPVLA FTTCKLVSKL AAASNFNLPV VLMDDYHVPS QSYGDRVKLV GRLETMIETE
201: PSESRVKQRV NQDDTAALLY SSGTTGTSKG VMLSHRNLIA LVQAYRARFG LEQRTICTIP MCHIFGFGGF ATGLIALGWT IVVLPKFDMA KLLSAVETHR
301: SSYLSLVPPI VVAMVNGANE INSKYDLSSL HTVVAGGAPL SREVTEKFVE NYPKVKILQG YGLTESTAIA ASMFNKEETK RYGASGLLAP NVEGKIVDPD
401: TGRVLGVNQT GELWIRSPTV MKGYFKNKEA TASTIDSEGW LKTGDLCYID GDGFVFVVDR LKELIKCNGY QVAPAELEAL LLAHPEIADA AVIPIPDMKA
501: GQYPMAYIVR KVGSNLSESE IMGFVAKQVS PYKKIRKVTF LASIPKNPSG KILRRELTKL TTSKL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.