Factsheet for Bra025822.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
peroxisome 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	peroxisome, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29527	Canola	peroxisome	95.21	97.55
Bra016466.1-P	Field mustard	peroxisome	84.35	83.58
AT1G20480.1	Thale cress	peroxisome	86.19	82.83
Bra016463.1-P	Field mustard	plastid	64.09	62.93
VIT_18s0001g00290.t01	Wine grape	peroxisome	61.69	61.02
KRH17509	Soybean	peroxisome, plastid	60.77	60.11
Solyc12g094520.1.1	Tomato	plastid	60.59	59.71
Bra012233.1-P	Field mustard	plastid	59.48	59.59
PGSC0003DMT400075394	Potato	peroxisome, plastid	60.41	59.53
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	59.48	58.83
GSMUA_Achr8P13230_001	Banana	peroxisome	53.96	58.25
Bra012232.1-P	Field mustard	peroxisome, plastid	58.01	57.38
Bra016465.1-P	Field mustard	plastid	51.01	56.42
Bra016464.1-P	Field mustard	plastid	58.01	56.15
Os03t0132000-01	Rice	plasma membrane	56.54	55.62
TraesCS4D01G323500.1	Wheat	plastid	55.99	55.17
HORVU4Hr1G081940.3	Barley	peroxisome	55.62	54.91
TraesCS5A01G498800.1	Wheat	peroxisome	55.8	54.89
Zm00001d027519_P001	Maize	plasma membrane	55.62	54.81
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	55.62	54.71
EER95569	Sorghum	peroxisome	55.62	54.61
Bra029229.1-P	Field mustard	peroxisome	45.3	44.01
Bra029561.1-P	Field mustard	peroxisome	41.62	41.7
Bra013369.1-P	Field mustard	peroxisome, plastid	40.7	38.57
Bra031266.1-P	Field mustard	peroxisome	37.57	36.96
Bra030429.1-P	Field mustard	peroxisome	37.2	36.59
Bra004109.1-P	Field mustard	peroxisome	35.36	34.53
Bra031263.1-P	Field mustard	peroxisome	34.44	33.82
Bra029560.1-P	Field mustard	peroxisome	33.15	33.71
Bra001819.1-P	Field mustard	peroxisome	34.99	33.1
Bra001820.1-P	Field mustard	peroxisome	34.62	32.14
Bra031265.1-P	Field mustard	peroxisome	32.6	31.66
Bra036646.1-P	Field mustard	peroxisome	37.02	13.59

Protein Annotations

MapMan:11.7.1.7	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
EnsemblPlantsGene:Bra025822	EnsemblPlants:Bra025822.1	EnsemblPlants:Bra025822.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	UniProt:M4EAL3	PFAM:PF00501
PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF186	SUPFAM:SSF56801	TMHMM:TMhelix
UniParc:UPI000253EF63	SEG:seg	:	:	:	:

Description

AT1G20480 (E=6e-257) | 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein

Coordinates

chrA06:-:8232065..8234028

Molecular Weight (calculated)

59212.9 Da

IEP (calculated)

8.258

GRAVY (calculated)

0.043

Length

543 amino acids

Sequence
(BLAST)

001: MAIDRKNGFC DSTSTFHSKR EPMSLPPNQQ LDVTSFIASQ PHRGKTAFVD AVTGRRLGFS ELWLGVERVA SCLYALGVRK GNVVIIISPN SILFPIVSLS
101: VMSLGAVITT ANPISTPGEI SNQIGDSRPV LAFTTRQLVS KLTNSNLPVV LMDENRVASS GGGERAKIVG SLEEMMETEA SESRVKQRVN QDDVAALLYS
201: SGTTGKSKGV MLTHRNLIAL VQAYRARFGL EQRTVCTIPM CHIFSFGGFA TSLIALGWTI VVLPKFEMDQ LLSAVEIHRP SHLSLVPPIL VAMVNGAEEI
301: NSKYDLSSLQ TVVVGGAPLS REVTEKFVER YSNVRVLQGY GLTETAAIVA SMFTKEETER YGSSGLLAPN VEGKIVDPDT GRVLGVDRTG ELWLRSPTVM
401: KGYFKNEATA ETIDSEGWLK TGDLCYIDCE GFVFVVDRLK ELIKCNGYQV APAELEALLL AHPEIADAAV IPIPEMKAGQ YPMAYIVRTA GSNLSESEIM
501: SFVAKQVSPY KRIRKVTFLA SIPKNPSGKI LRRELIKLTT SKL

Best Arabidopsis Sequence Match ( AT1G20480.1 )
(BLAST)

001: MAVKHGVDGD GSEIESRTLA VDRKSGFCES TSIFYSKREP MALPPNQFLD VTSFIASQPH RGKTVFVDAV TGRRLSFPEL WLGVERVAGC LYALGVRKGN
101: VVIILSPNSI LFPIVSLSVM SLGAIITTAN PINTSDEISK QIGDSRPVLA FTTCKLVSKL AAASNFNLPV VLMDDYHVPS QSYGDRVKLV GRLETMIETE
201: PSESRVKQRV NQDDTAALLY SSGTTGTSKG VMLSHRNLIA LVQAYRARFG LEQRTICTIP MCHIFGFGGF ATGLIALGWT IVVLPKFDMA KLLSAVETHR
301: SSYLSLVPPI VVAMVNGANE INSKYDLSSL HTVVAGGAPL SREVTEKFVE NYPKVKILQG YGLTESTAIA ASMFNKEETK RYGASGLLAP NVEGKIVDPD
401: TGRVLGVNQT GELWIRSPTV MKGYFKNKEA TASTIDSEGW LKTGDLCYID GDGFVFVVDR LKELIKCNGY QVAPAELEAL LLAHPEIADA AVIPIPDMKA
501: GQYPMAYIVR KVGSNLSESE IMGFVAKQVS PYKKIRKVTF LASIPKNPSG KILRRELTKL TTSKL

Arabidopsis Description

4CLL24-coumarate--CoA ligase-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84P25]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.