Factsheet for Bra012233.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1
peroxisome 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01369	Canola	plastid	100.0	99.82
Bra012232.1-P	Field mustard	peroxisome, plastid	82.1	81.06
Bra016465.1-P	Field mustard	plastid	69.74	76.99
AT1G20490.2	Thale cress	peroxisome	60.7	73.6
Bra016464.1-P	Field mustard	plastid	74.35	71.84
Bra016463.1-P	Field mustard	plastid	67.34	66.0
VIT_18s0001g00290.t01	Wine grape	peroxisome	64.94	64.12
GSMUA_Achr8P13230_001	Banana	peroxisome	58.67	63.22
KRH17509	Soybean	peroxisome, plastid	64.02	63.21
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	62.18	61.38
Solyc12g094520.1.1	Tomato	plastid	61.44	60.44
PGSC0003DMT400075394	Potato	peroxisome, plastid	61.25	60.25
Bra016466.1-P	Field mustard	peroxisome	60.15	59.49
Bra025822.1-P	Field mustard	peroxisome	59.59	59.48
Zm00001d027519_P001	Maize	plasma membrane	59.41	58.44
EER95569	Sorghum	peroxisome	58.86	57.69
TraesCS4D01G323500.1	Wheat	plastid	58.49	57.53
HORVU4Hr1G081940.3	Barley	peroxisome	58.3	57.45
TraesCS5A01G498800.1	Wheat	peroxisome	58.3	57.25
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	57.93	56.88
Os03t0132000-01	Rice	plasma membrane	57.38	56.34
Bra029229.1-P	Field mustard	peroxisome	46.49	45.08
Bra029561.1-P	Field mustard	peroxisome	41.7	41.7
Bra013369.1-P	Field mustard	peroxisome, plastid	40.96	38.74
Bra031266.1-P	Field mustard	peroxisome	36.16	35.51
Bra031263.1-P	Field mustard	peroxisome	36.16	35.44
Bra030429.1-P	Field mustard	peroxisome	35.79	35.14
Bra029560.1-P	Field mustard	peroxisome	33.95	34.46
Bra001819.1-P	Field mustard	peroxisome	35.61	33.62
Bra001820.1-P	Field mustard	peroxisome	35.61	32.99
Bra031265.1-P	Field mustard	peroxisome	33.95	32.92
Bra004109.1-P	Field mustard	peroxisome	33.76	32.91
Bra036646.1-P	Field mustard	peroxisome	33.76	12.37

Protein Annotations

MapMan:11.7.1.7	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
EnsemblPlantsGene:Bra012233	EnsemblPlants:Bra012233.1	EnsemblPlants:Bra012233.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	UniProt:M4D6X3	PFAM:PF00501
PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF186	SUPFAM:SSF56801	TMHMM:TMhelix
UniParc:UPI0002541597	SEG:seg	:	:	:	:

Description

AT1G20500 (E=4e-240) | 4-coumarate-CoA ligase

Coordinates

chrA07:+:9158204..9160768

Molecular Weight (calculated)

58911.2 Da

IEP (calculated)

8.519

GRAVY (calculated)

-0.002

Length

542 amino acids

Sequence
(BLAST)

001: MASLIDSRSG FCKSNSTFYS KRNPLPLPAN PSLDVTTFIS SQPHRGTTAF IDAATGHRLS FSELWTAVER VADCLHHDIG LKRGHVVLIL SPNSIYIPVV
101: SLAVMSLGAV VTTANTLNTA AEISRQLADS NPTLAFTTAD LAPKLAGSGI SVVLERVGST RGVDVVGAVS EMMKKERRGQ RVRDRVNEED TAMMLYSSGT
201: TGPSKGVITS HRNLTASVAR FVSEKRIGGE VFLCTVPMFH TYGLLCFTMF TVAVGSTVVI LRRFDLHGMM AAVEKYSATI LALTPPVVVA MTNEADVIRA
301: KYDLSSLRTV RCGGAPLSKE VTEGFMEKYP TVDILAGYAL TESNGAGASI DTVEESRRYG SVGLLAPGVE ARIVDPDTGR VMGVNQTGEL WLRGPSISKG
401: YFKNEEATNE TINLEGWLKT GDICYIDEDG FLFVVDRLKE LIKYKGYQVP PAELEALLVT HPDILDAAVI PFPDKEAGQY PMAYVTRKIE SNLSEKQIID
501: FVSKQVAPYK KIRKVAFINS IPKNPSGKTL RKDLIKLATS KI

Best Arabidopsis Sequence Match ( AT1G20500.1 )
(BLAST)

001: MAYPERSLIV DPRSGFCKSN STFYSKRQPL SLPPNLSRDV TTFISSQPHR GKTAFIDAAT GQCLTFSDLW RAVDRVADCL YHEVGIRRGD VVLILSPNSI
101: FIPVVCLSVM SLGAVFTTAN TLNTSGEISK QIADSNPTLV FTTRQLAPKL PVAISVVLTD DEVYQELTSA IRVVGILSEM VKKEPSGQRV RDRVNQDDTA
201: MMLYSSGTTG PSKGVISSHR NLTAHVARFI SDNLKRDDIF ICTVPMFHTY GLLTFAMGTV ALGSTVVILR RFQLHDMMDA VEKHRATALA LAPPVLVAMI
301: NDADLIKAKY DLSSLKTVRC GGAPLSKEVT EGFLEKYPTV DILQGYALTE SNGGGAFTNS AEESRRYGTA GTLTSDVEAR IVDPNTGRFM GINQTGELWL
401: KGPSISKGYF KNQEATNETI NLEGWLKTGD LCYIDEDGFL FVVDRLKELI KYKGYQVPPA ELEALLITHP DILDAAVIPF PDKEAGQYPM AYVVRKHESN
501: LSEKQVIDFI SKQVAPYKKI RKVSFINSIP KTASGKTLRK DLIKLATSKL

Arabidopsis Description

4CLL44-coumarate--CoA ligase-like 4 [Source:UniProtKB/Swiss-Prot;Acc:P0C5B6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.