Factsheet for Bra016465.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96637	Canola	plastid	95.11	84.45
CDY33628	Canola	plastid	94.91	84.42
Bra012233.1-P	Field mustard	plastid	76.99	69.74
AT5G38120.1	Thale cress	plastid	75.76	67.64
Bra012232.1-P	Field mustard	peroxisome, plastid	75.15	67.21
Bra016464.1-P	Field mustard	plastid	76.78	67.2
Bra016463.1-P	Field mustard	plastid	63.95	56.78
VIT_18s0001g00290.t01	Wine grape	peroxisome	62.73	56.1
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	60.69	54.28
PGSC0003DMT400075394	Potato	peroxisome, plastid	59.67	53.18
Solyc12g094520.1.1	Tomato	plastid	59.06	52.63
GSMUA_Achr8P13230_001	Banana	peroxisome	53.77	52.49
KRH17509	Soybean	peroxisome, plastid	58.66	52.46
Bra025822.1-P	Field mustard	peroxisome	56.42	51.01
Bra016466.1-P	Field mustard	peroxisome	56.62	50.73
TraesCS4D01G323500.1	Wheat	plastid	54.18	48.28
Zm00001d027519_P001	Maize	plasma membrane	54.18	48.28
TraesCS5A01G498800.1	Wheat	peroxisome	54.18	48.19
HORVU4Hr1G081940.3	Barley	peroxisome	53.77	48.0
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	53.56	47.64
EER95569	Sorghum	peroxisome	53.56	47.56
Os03t0132000-01	Rice	plasma membrane	53.36	47.46
Bra029229.1-P	Field mustard	peroxisome	42.36	37.21
Bra029561.1-P	Field mustard	peroxisome	39.92	36.16
Bra013369.1-P	Field mustard	peroxisome, plastid	37.68	32.29
Bra029560.1-P	Field mustard	peroxisome	34.83	32.02
Bra031263.1-P	Field mustard	peroxisome	33.4	29.66
Bra030429.1-P	Field mustard	peroxisome	32.79	29.17
Bra031266.1-P	Field mustard	peroxisome	32.18	28.62
Bra001820.1-P	Field mustard	peroxisome	33.4	28.03
Bra001819.1-P	Field mustard	peroxisome	32.38	27.7
Bra004109.1-P	Field mustard	peroxisome	31.16	27.52
Bra031265.1-P	Field mustard	peroxisome	30.75	27.01
Bra036646.1-P	Field mustard	peroxisome	32.18	10.68

Protein Annotations

Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:35.1	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	EnsemblPlantsGene:Bra016465
EnsemblPlants:Bra016465.1	EnsemblPlants:Bra016465.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	UniProt:M4DIY8	PFAM:PF00501	ScanProsite:PS00455
PANTHER:PTHR24096	PANTHER:PTHR24096:SF186	SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI0002546B67	SEG:seg

Description

AT5G38120 (E=4e-197) | 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein

Coordinates

chrA08:+:18603283..18604969

Molecular Weight (calculated)

53269.3 Da

IEP (calculated)

7.325

GRAVY (calculated)

0.054

Length

491 amino acids

Sequence
(BLAST)

001: MTNSIRSSST SSSLIDPRSG FCNANSTFYS KRKPLPLPAN TSLDVTTFIS SQPHRGTTAF IDAATGHHLS FSELWTAVNR VADCLHRDVG VRKGDVVLVL
101: SPNSISIPIV CLSVMSLGAV VTTANPLNTA GEISRQMADS NPVLAFTTPE LSQKLAGSGI SVVLERVGPT RGVRVVGYLS EMMNKEPRGK NRVRDRVHQD
201: DTAMLLYSSG TTGRSKGVIS SHGNLIAHVA RHLVEPMDPY EIFLCTVPMF HTFGLLNYVM ATASLGSTVV ILRRFELHEM LAAVVKYRAT TLVLVTPVVV
301: AMMNGADLIK AKYDLSSLRI VRCGGAPLSK EVTEGFIEKY PTVDIFQGYA LTESNGAGGS IDTVEESRRY GAVGLLSSGV EARIVDPDTG RVMGVNRTGE
401: LWLKGPSIAK GYFKNEEATK ESFNLQGWLK TGDLCYIDDD GFLFTVDRLK ELIKYKGYQV PPAELEALLL NHPDILDAAV IPLSLVDLLL Q

Best Arabidopsis Sequence Match ( AT5G38120.1 )
(BLAST)

001: MANSQRSSSL IDPRNGFCTS NSTFYSKRKP LALPSKESLD ITTFISSQTY RGKTAFIDAA TDHRISFSDL WMAVDRVADC LLHDVGIRRG DVVLVLSPNT
101: ISIPIVCLSV MSLGAVLTTA NPLNTASEIL RQIADSNPKL AFTTPELAPK IASSGISIVL ERVEDTLRVP RGLKVVGNLT EMMKKEPSGQ AVRNQVHKDD
201: TAMLLYSSGT TGRSKGVNSS HGNLIAHVAR YIAEPFEQPQ QTFICTVPLF HTFGLLNFVL ATLALGTTVV ILPRFDLGEM MAAVEKYRAT TLILVPPVLV
301: TMINKADQIM KKYDVSFLRT VRCGGAPLSK EVTQGFMKKY PTVDVYQGYA LTESNGAGAS IESVEESRRY GAVGLLSCGV EARIVDPNTG QVMGLNQTGE
401: LWLKGPSIAK GYFRNEEEII TSEGWLKTGD LCYIDNDGFL FIVDRLKELI KYKGYQVPPA ELEALLLNHP DILDAAVIPF PDKEAGQFPM AYVARKPESN
501: LCEKKVIDFI SKQVAPYKKI RKVAFIDSIP KTPSGKTLRK DLIKFAISKI

Arabidopsis Description

4CLL84-coumarate--CoA ligase-like 8 [Source:UniProtKB/Swiss-Prot;Acc:Q84P26]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.