Factsheet for Bra012232.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

plastid 3
mitochondrion 1
peroxisome 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01370	Canola	peroxisome, plastid	100.0	99.82
AT1G20500.1	Thale cress	plastid	83.06	82.91
Bra012233.1-P	Field mustard	plastid	81.06	82.1
Bra016465.1-P	Field mustard	plastid	67.21	75.15
Bra016464.1-P	Field mustard	plastid	73.77	72.19
Bra016463.1-P	Field mustard	plastid	66.67	66.18
VIT_18s0001g00290.t01	Wine grape	peroxisome	64.85	64.85
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	63.57	63.57
KRH17509	Soybean	peroxisome, plastid	63.02	63.02
Solyc12g094520.1.1	Tomato	plastid	61.93	61.71
PGSC0003DMT400075394	Potato	peroxisome, plastid	61.57	61.34
GSMUA_Achr8P13230_001	Banana	peroxisome	56.1	61.23
Bra025822.1-P	Field mustard	peroxisome	57.38	58.01
Bra016466.1-P	Field mustard	peroxisome	57.56	57.66
Zm00001d027519_P001	Maize	plasma membrane	57.56	57.35
EER95569	Sorghum	peroxisome	57.56	57.14
HORVU4Hr1G081940.3	Barley	peroxisome	57.19	57.09
TraesCS4D01G323500.1	Wheat	plastid	57.01	56.81
TraesCS5A01G498800.1	Wheat	peroxisome	56.83	56.52
Os03t0132000-01	Rice	plasma membrane	56.47	56.16
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	56.47	56.16
Bra029229.1-P	Field mustard	peroxisome	44.08	43.29
Bra029561.1-P	Field mustard	peroxisome	42.26	42.8
Bra013369.1-P	Field mustard	peroxisome, plastid	39.34	37.7
Bra031263.1-P	Field mustard	peroxisome	36.43	36.17
Bra029560.1-P	Field mustard	peroxisome	34.06	35.02
Bra031266.1-P	Field mustard	peroxisome	35.15	34.96
Bra030429.1-P	Field mustard	peroxisome	35.15	34.96
Bra001819.1-P	Field mustard	peroxisome	36.25	34.67
Bra031265.1-P	Field mustard	peroxisome	34.79	34.17
Bra001820.1-P	Field mustard	peroxisome	36.25	34.02
Bra004109.1-P	Field mustard	peroxisome	33.33	32.91
Bra036646.1-P	Field mustard	peroxisome	32.97	12.24

Protein Annotations

MapMan:11.7.1.7	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
EnsemblPlantsGene:Bra012232	EnsemblPlants:Bra012232.1	EnsemblPlants:Bra012232.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	UniProt:M4D6X2	PFAM:PF00501
PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF186	SUPFAM:SSF56801	TMHMM:TMhelix
UniParc:UPI0002541598	SEG:seg	:	:	:	:

Description

AT1G20500 (E=4e-249) | 4-coumarate-CoA ligase

Coordinates

chrA07:+:9163483..9166014

Molecular Weight (calculated)

59673.9 Da

IEP (calculated)

8.107

GRAVY (calculated)

-0.046

Length

549 amino acids

Sequence
(BLAST)

001: MADPSPPRSL IDSRSGFCKA NSTFYTKRNP LGLPANPSLD VTTFISSQPH RGTTAFIDAA TGHSLSFSDL WRAVDRVAEC LHRDVGIRRG DVVLILSPNS
101: IYIPVVCLSV MSLGAVVTTA NTLNTAGEIS KQIADSNPTL AFTTVQLAPK LPAGISIVLT EEERVGSTGG VNFVGSVSEM MRKEPRGQRV RDRVHQDDTA
201: VMLYSSGTTG PSKGVLSSHG NLTAYVARML TETSMHGTFI CTVPMFHTYG LLTFAMATVA IGSTVVILRR FELNDMMAAV EKYKATTLLL VPPVLVAMVN
301: EADSIKAKYD LSSLKTVRCG GAPLSKEATE GFLEKYPTVN IFQAYALTES NGGGAFIDTV EDSRRFGTSG PLTSDVEARI VDPDTGRFMG INQTGELWLK
401: GPTIAKGYFK NQEATNETIN AEGWLKTGDL CYIDEDGFVF VVDRLKELIK YKGYQVPPAE LEALLITHPD ILDAAVIPFP DKEAGQYPMA YVTRKVESNL
501: SEKQVIEFIS KQVAPYKKIR KVAFINSIPK TASGKTLRKD LIKLATSKL

Best Arabidopsis Sequence Match ( AT1G20500.1 )
(BLAST)

001: MAYPERSLIV DPRSGFCKSN STFYSKRQPL SLPPNLSRDV TTFISSQPHR GKTAFIDAAT GQCLTFSDLW RAVDRVADCL YHEVGIRRGD VVLILSPNSI
101: FIPVVCLSVM SLGAVFTTAN TLNTSGEISK QIADSNPTLV FTTRQLAPKL PVAISVVLTD DEVYQELTSA IRVVGILSEM VKKEPSGQRV RDRVNQDDTA
201: MMLYSSGTTG PSKGVISSHR NLTAHVARFI SDNLKRDDIF ICTVPMFHTY GLLTFAMGTV ALGSTVVILR RFQLHDMMDA VEKHRATALA LAPPVLVAMI
301: NDADLIKAKY DLSSLKTVRC GGAPLSKEVT EGFLEKYPTV DILQGYALTE SNGGGAFTNS AEESRRYGTA GTLTSDVEAR IVDPNTGRFM GINQTGELWL
401: KGPSISKGYF KNQEATNETI NLEGWLKTGD LCYIDEDGFL FVVDRLKELI KYKGYQVPPA ELEALLITHP DILDAAVIPF PDKEAGQYPM AYVVRKHESN
501: LSEKQVIDFI SKQVAPYKKI RKVSFINSIP KTASGKTLRK DLIKLATSKL

Arabidopsis Description

4CLL44-coumarate--CoA ligase-like 4 [Source:UniProtKB/Swiss-Prot;Acc:P0C5B6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.