Factsheet for TraesCS4B01G326800.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

plastid 3
peroxisome 3
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G498800.1	Wheat	peroxisome	98.55	98.55
TraesCS4D01G323500.1	Wheat	plastid	98.19	98.37
HORVU4Hr1G081940.3	Barley	peroxisome	96.38	96.73
Os03t0132000-01	Rice	plasma membrane	88.77	88.77
EER95569	Sorghum	peroxisome	87.86	87.7
Zm00001d027519_P001	Maize	plasma membrane	86.96	87.11
GSMUA_Achr8P13230_001	Banana	peroxisome	66.85	73.36
KRH17509	Soybean	peroxisome, plastid	64.31	64.66
PGSC0003DMT400075394	Potato	peroxisome, plastid	64.31	64.43
CDY33631	Canola	plastid	64.49	64.38
Bra016463.1-P	Field mustard	plastid	64.13	64.01
Solyc12g094520.1.1	Tomato	plastid	63.77	63.88
CDX96633	Canola	plastid	63.95	63.83
VIT_18s0001g00290.t01	Wine grape	peroxisome	63.41	63.75
AT1G20510.1	Thale cress	plastid	62.32	63.0
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	58.7	59.02
Bra012233.1-P	Field mustard	plastid	56.88	57.93
CDY01369	Canola	plastid	56.88	57.83
CDY31883	Canola	plastid	56.52	57.46
CDX96636	Canola	golgi, vacuole	39.49	56.92
AT1G20500.1	Thale cress	plastid	56.7	56.91
Bra012232.1-P	Field mustard	peroxisome, plastid	56.16	56.47
CDY31472	Canola	peroxisome	52.54	56.42
CDY29527	Canola	peroxisome	54.17	56.42
CDY01370	Canola	peroxisome, plastid	56.16	56.36
AT1G20480.1	Thale cress	peroxisome	57.25	55.93
CDX96637	Canola	plastid	55.98	55.88
CDY33628	Canola	plastid	55.8	55.8
Bra025822.1-P	Field mustard	peroxisome	54.71	55.62
Bra016464.1-P	Field mustard	plastid	56.52	55.62
CDX96638	Canola	peroxisome	52.72	55.22
Bra016466.1-P	Field mustard	peroxisome	54.71	55.11
Bra016465.1-P	Field mustard	plastid	47.64	53.56
CDY33627	Canola	peroxisome	52.54	52.06
AT5G38120.1	Thale cress	plastid	51.45	51.64
CDY31474	Canola	peroxisome	53.8	51.21
CDY33629	Canola	golgi, vacuole	38.04	49.65
AT1G20490.2	Thale cress	peroxisome	39.31	48.55
TraesCS3B01G426300.1	Wheat	peroxisome	46.38	45.55
TraesCS4B01G075900.1	Wheat	plastid	42.93	43.65
TraesCS3B01G426200.1	Wheat	peroxisome, plastid	44.02	43.39
TraesCS4B01G269200.1	Wheat	peroxisome	43.12	42.88
TraesCS1B01G211300.1	Wheat	peroxisome	44.57	41.91
TraesCS4B01G076000.1	Wheat	peroxisome	40.04	40.11
TraesCS4B01G076100.1	Wheat	peroxisome	39.13	39.78
TraesCS3B01G515400.1	Wheat	peroxisome	39.49	39.64
TraesCS5B01G570100.1	Wheat	peroxisome	39.67	39.53
TraesCS2B01G171200.1	Wheat	peroxisome	37.86	38.7
TraesCS6B01G179900.2	Wheat	peroxisome	36.23	36.5
TraesCS6B01G294100.1	Wheat	peroxisome	37.14	35.78
TraesCS2B01G291100.1	Wheat	plastid	37.5	33.44

Protein Annotations

EnsemblPlants:TraesCS4B01G326800.1	EnsemblPlantsGene:TraesCS4B01G326800	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR24096
PANTHER:PTHR24096:SF186	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801
TIGR:cd05904	TMHMM:TMhelix	MapMan:11.7.1.7	:	:	:

Description

No Description!

Coordinates

chr4B:+:617624357..617628178

Molecular Weight (calculated)

59352.8 Da

IEP (calculated)

8.622

GRAVY (calculated)

0.052

Length

552 amino acids

Sequence
(BLAST)

001: MATAAVHPWS GYCAATGAFR SKRAEVPLPA DRDLDVVTFL ASRRHSGVVA LVDASTGRRT TFAELWRAVA GAATALAAPP FGLRKGHVAL ILSPNSVHFP
101: VAALAAMSLG AVVTTANPLN TAAEVAKQVA DARPVLAFTT RDLLPKLPRA ADGLRVVLLE SSSSPAPADA ADPRIVATID EISATTPDPA RRRDRVTQDD
201: QATLLYSSGT TGPSKGVVAT HRNLISMVQI VMNRFRLEDS DTTETFLCTV PMFHVYGLVA FATGLLGCGA TIVVLSKFEL PEMLRCISAY GVTYLPLVPP
301: ILVAMVAHPK PLPLGNLRKV LSGGAPLSKE LIEGFREKYP QVEILQGYGL TESTAIGAST DSAEESRRYG TAGLLSPNTE AKIVDPETGE ALPVNRTGEL
401: WIRGPYVMKG YFNNTEATQS TVTPDGWLKT GDLCYIDEDG YLFVVDRLKE LIKYKGYQVP PAELEALLLT HPEVSDVAVI PFPDRDVGQF PMAYVVRKKG
501: SNLSAQEVME FVAKQVAPYK KVRKVAFVTD IPKNASGKIL RKDLIKLATS KL

Best Arabidopsis Sequence Match ( AT1G20510.1 )
(BLAST)

001: MASVNSRSGF CNSNSTFYSK RTPIPLPPNP SLDVTTFISS QAHRGRIAFI DASTGQNLTF TELWRAVESV ADCLSEIGIR KGHVVLLLSP NSILFPVVCL
101: SVMSLGAIIT TTNPLNTSNE IAKQIKDSNP VLAFTTSQLL PKISAAAKKL PIVLMDEERV DSVGDVRRLV EMMKKEPSGN RVKERVDQDD TATLLYSSGT
201: TGMSKGVISS HRNLIAMVQT IVNRFGSDDG EQRFICTVPM FHIYGLAAFA TGLLAYGSTI IVLSKFEMHE MMSAIGKYQA TSLPLVPPIL VAMVNGADQI
301: KAKYDLSSMH TVLCGGAPLS KEVTEGFAEK YPTVKILQGY GLTESTGIGA STDTVEESRR YGTAGKLSAS MEGRIVDPVT GQILGPKQTG ELWLKGPSIM
401: KGYFSNEEAT SSTLDSEGWL RTGDLCYIDE DGFIFVVDRL KELIKYKGYQ VAPAELEALL LTHPEITDAA VIPFPDKEVG QFPMAYVVRK TGSSLSEKTI
501: MEFVAKQVAP YKRIRKVAFV SSIPKNPSGK ILRKDLIKIA TSNSKL

Arabidopsis Description

4CLL54-coumarate--CoA ligase-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q84P21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.