CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016463.1-P	Field mustard	plastid	99.46	99.46
CDY33631	Canola	plastid	98.55	98.55
AT1G20510.1	Thale cress	plastid	89.33	90.48
VIT_18s0001g00290.t01	Wine grape	peroxisome	73.96	74.5
KRH17509	Soybean	peroxisome, plastid	73.06	73.59
PGSC0003DMT400075394	Potato	peroxisome, plastid	73.24	73.5
Solyc12g094520.1.1	Tomato	plastid	73.06	73.32
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	68.72	69.22
GSMUA_Achr8P13230_001	Banana	peroxisome	62.39	68.59
CDY31883	Canola	plastid	66.55	67.77
CDY01369	Canola	plastid	66.0	67.22
CDY01370	Canola	peroxisome, plastid	66.37	66.73
CDY33628	Canola	plastid	65.46	65.58
CDY31472	Canola	peroxisome	60.76	65.37
CDX96637	Canola	plastid	65.28	65.28
CDY29527	Canola	peroxisome	62.03	64.72
HORVU4Hr1G081940.3	Barley	peroxisome	64.2	64.55
TraesCS5A01G498800.1	Wheat	peroxisome	64.2	64.31
CDX96636	Canola	golgi, vacuole	44.48	64.23
TraesCS4D01G323500.1	Wheat	plastid	63.83	64.07
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	63.83	63.95
Zm00001d027519_P001	Maize	plasma membrane	63.11	63.34
EER95569	Sorghum	peroxisome	63.29	63.29
CDX96638	Canola	peroxisome	59.86	62.81
Os03t0132000-01	Rice	plasma membrane	62.03	62.14
CDY45731	Canola	peroxisome	17.18	61.69
CDY31474	Canola	peroxisome	62.39	59.48
CDY33627	Canola	peroxisome	59.31	58.89
CDY33629	Canola	golgi, vacuole	42.13	55.08
CDY45730	Canola	vacuole	41.05	49.46
CDY71478	Canola	vacuole	40.87	49.24
CDY53918	Canola	peroxisome	16.64	49.2
CDY32418	Canola	peroxisome	15.73	47.54
CDY46375	Canola	peroxisome	41.23	42.07
CDY39155	Canola	peroxisome	40.87	41.7
CDY39153	Canola	peroxisome	40.14	41.19
CDY46376	Canola	peroxisome	39.96	41.0
CDX78914	Canola	peroxisome, plastid	40.14	38.68
CDY43921	Canola	peroxisome	37.79	37.93
CDX87831	Canola	peroxisome	37.79	37.93
CDY19568	Canola	peroxisome	36.89	36.96
CDY48875	Canola	mitochondrion, plastid, vacuole	29.66	36.94
CDY68920	Canola	peroxisome	36.17	36.17
CDY07442	Canola	peroxisome	36.17	35.97
CDY39816	Canola	peroxisome	35.08	35.93
CDY06431	Canola	peroxisome	35.8	35.8
CDY39293	Canola	peroxisome	35.99	35.73
CDX82208	Canola	peroxisome	36.17	34.97
CDY32416	Canola	peroxisome	35.8	34.49
CDY19570	Canola	peroxisome	34.72	34.35
CDX99401	Canola	peroxisome	37.61	31.14
CDY06435	Canola	vacuole	23.15	28.76
CDY71190	Canola	peroxisome	19.17	28.65
CDY65966	Canola	peroxisome	16.46	25.78
CDY03253	Canola	peroxisome	35.26	12.64
CDX78913	Canola	cytosol	0.18	0.56

Protein Annotations

EnsemblPlants:CDX96633	EnsemblPlantsGene:GSBRNA2T00102837001	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:A0A078EB85	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
PANTHER:PTHR24096	PANTHER:PTHR24096:SF186	PFAM:PF00501	PFAM:PF13193	ProteinID:CDX96633	ProteinID:CDX96633.1
ScanProsite:PS00455	SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI0004EE6E7E	MapMan:11.7.1.7	:

Description

BnaA08g21760D

Coordinates

chrLK031895:+:340906..343293

Molecular Weight (calculated)

59785.4 Da

IEP (calculated)

8.512

GRAVY (calculated)

-0.001

Length

553 amino acids

Sequence
(BLAST)

001: MASVDSRSGF CNSNSTFYSK RKPIPLPPNP SLDVTTFISS QAHLGRTAFI DASTGKNLTF AQLWRAVESV GDCLSDMGIR KGHVVLLLSP NSILFPVVCL
101: SVMSLGAVIT TTNPLNTAAE IAKQIKDSNP VMAFTTAELL PKIAAASGGS NKRLPIVLMD EERVDSAGEV RRLAEMMRRE PSGTRVAERV DQDDTATLLY
201: SSGTTGMSKG VVSSHRNLIA MVQTVVNRFG SDVGSQGEQR FICTVPMFHI YGLAAFATGL LAYGSTIIVL SKFEMGEMLS AIGKYQATYL PLVPPILVAM
301: VNGAEQINAK YDLSSLHTVL CGGAPLSKEV TEGFMDKYPT VKILQGYGLT ESTGIGASTD TVEESRRYGT AGKLSASMEG RIVDPVTGRV LGPNRTGELW
401: LKGPSIMKGY FSNEEATSST IDSEGWLRTG DLCYIDEDGF IFVVDRLKEL IKYKGYQVPP AELEALLLTH PEIADAAVIP FPDREVGQFP MAYVVKKTGS
501: LLSEKSVMEF VSKQVAPYKR VRKVAFVSSI PKNPSGKILR KDLIKLATSN SKL

Best Arabidopsis Sequence Match ( AT1G20510.1 )
(BLAST)

001: MASVNSRSGF CNSNSTFYSK RTPIPLPPNP SLDVTTFISS QAHRGRIAFI DASTGQNLTF TELWRAVESV ADCLSEIGIR KGHVVLLLSP NSILFPVVCL
101: SVMSLGAIIT TTNPLNTSNE IAKQIKDSNP VLAFTTSQLL PKISAAAKKL PIVLMDEERV DSVGDVRRLV EMMKKEPSGN RVKERVDQDD TATLLYSSGT
201: TGMSKGVISS HRNLIAMVQT IVNRFGSDDG EQRFICTVPM FHIYGLAAFA TGLLAYGSTI IVLSKFEMHE MMSAIGKYQA TSLPLVPPIL VAMVNGADQI
301: KAKYDLSSMH TVLCGGAPLS KEVTEGFAEK YPTVKILQGY GLTESTGIGA STDTVEESRR YGTAGKLSAS MEGRIVDPVT GQILGPKQTG ELWLKGPSIM
401: KGYFSNEEAT SSTLDSEGWL RTGDLCYIDE DGFIFVVDRL KELIKYKGYQ VAPAELEALL LTHPEITDAA VIPFPDKEVG QFPMAYVVRK TGSSLSEKTI
501: MEFVAKQVAP YKRIRKVAFV SSIPKNPSGK ILRKDLIKIA TSNSKL

Arabidopsis Description

4CLL54-coumarate--CoA ligase-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q84P21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.