Factsheet for GSMUA_Achr8P13230_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0132000-01	Rice	plasma membrane	75.15	68.48
HORVU4Hr1G081940.3	Barley	peroxisome	73.56	67.27
TraesCS4D01G323500.1	Wheat	plastid	73.56	67.15
TraesCS5A01G498800.1	Wheat	peroxisome	73.56	67.03
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	73.36	66.85
Zm00001d027519_P001	Maize	plasma membrane	73.16	66.79
EER95569	Sorghum	peroxisome	73.36	66.73
KRH17509	Soybean	peroxisome, plastid	69.98	64.12
VIT_18s0001g00290.t01	Wine grape	peroxisome	68.99	63.21
Solyc12g094520.1.1	Tomato	plastid	68.99	62.98
CDY33631	Canola	plastid	68.99	62.75
PGSC0003DMT400075394	Potato	peroxisome, plastid	68.59	62.61
CDX96633	Canola	plastid	68.59	62.39
AT1G20510.1	Thale cress	plastid	67.59	62.27
Bra016463.1-P	Field mustard	plastid	68.39	62.21
Bra012233.1-P	Field mustard	plastid	63.22	58.67
CDY01369	Canola	plastid	63.22	58.56
CDY31883	Canola	plastid	62.62	58.01
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	63.22	57.92
CDX96637	Canola	plastid	62.43	56.78
AT1G20500.1	Thale cress	plastid	62.03	56.73
CDY33628	Canola	plastid	62.03	56.52
Bra012232.1-P	Field mustard	peroxisome, plastid	61.23	56.1
CDY01370	Canola	peroxisome, plastid	61.23	56.0
CDY31472	Canola	peroxisome	56.86	55.64
CDY29527	Canola	peroxisome	58.25	55.28
Bra016464.1-P	Field mustard	plastid	60.64	54.37
AT5G38120.1	Thale cress	plastid	59.44	54.36
CDX96636	Canola	golgi, vacuole	41.35	54.31
Bra025822.1-P	Field mustard	peroxisome	58.25	53.96
CDX96638	Canola	peroxisome	56.46	53.89
Bra016465.1-P	Field mustard	plastid	52.49	53.77
AT1G20480.1	Thale cress	peroxisome	60.24	53.63
Bra016466.1-P	Field mustard	peroxisome	58.25	53.47
CDY31474	Canola	peroxisome	58.05	50.34
CDY33627	Canola	peroxisome	55.27	49.91
AT1G20490.2	Thale cress	peroxisome	43.54	48.99
CDY33629	Canola	golgi, vacuole	40.36	47.99
GSMUA_Achr5P25570_001	Banana	peroxisome	47.51	43.3
GSMUA_Achr9P07820_001	Banana	peroxisome	15.51	42.86
GSMUA_Achr8P14210_001	Banana	peroxisome	42.15	42.74
GSMUA_AchrUn_...	Banana	peroxisome	40.76	41.75
GSMUA_Achr11P...	Banana	peroxisome, plasma membrane	28.03	41.47
GSMUA_Achr5P19650_001	Banana	peroxisome	39.76	41.15
GSMUA_Achr4P12590_001	Banana	peroxisome	38.57	39.67
GSMUA_Achr1P13470_001	Banana	peroxisome	40.56	39.53
GSMUA_Achr9P22840_001	Banana	peroxisome	30.02	39.53
GSMUA_Achr1P23450_001	Banana	peroxisome	39.36	38.08
GSMUA_AchrUn_...	Banana	peroxisome	38.37	37.26
GSMUA_AchrUn_...	Banana	peroxisome	40.56	37.16
GSMUA_Achr7P05070_001	Banana	peroxisome	36.38	37.12
GSMUA_Achr4P05820_001	Banana	peroxisome	38.37	36.97
GSMUA_Achr11P...	Banana	peroxisome	39.16	36.21
GSMUA_Achr6P36020_001	Banana	peroxisome	33.4	33.94
GSMUA_Achr2P18040_001	Banana	peroxisome, plastid	34.59	32.34
GSMUA_Achr11P...	Banana	peroxisome, plastid	34.19	32.27

Protein Annotations

EnsemblPlants:GSMUA_Achr8P13230_001	EnsemblPlants:GSMUA_Achr8T13230_001	EnsemblPlantsGene:GSMUA_Achr8G13230_001	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
PANTHER:PTHR24096	PANTHER:PTHR24096:SF186	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	SEG:seg
SUPFAM:SSF56801	UniParc:UPI0002962F1B	UniProt:M0TQ26	MapMan:11.7.1.7	:	:

Description

4-coumarate--CoA ligase-like 4 [Source:GMGC_GENE;Acc:GSMUA_Achr8G13230_001]

Coordinates

chr8:+:10022634..10025396

Molecular Weight (calculated)

54642.2 Da

IEP (calculated)

9.108

GRAVY (calculated)

-0.029

Length

503 amino acids

Sequence
(BLAST)

001: MGKMVSSRSG VDPRSGYCDA NSTFYSKRPP IALPADPNLS VTAFLASRRH SGTTAFIDAA TGHRPHVVLL LSPNSVHFPV VSLAVMSLGA VLTTTNPLNT
101: PVEIGRQLAD SCPVLAFTTR ALIPKLASAP DLRIVLLDDR RRPSDDRRID DTATLLYSSG TTGTSKGVVA THRNLIAMVQ IVLNRFKLED GAEPETFICT
201: VPMFHVFGLV AFATGLLGSG STVVVLSKFE LGEMVRAINE YGATYLPLVP PILVAMANQS RPLPLGRLRR ALSGGAPLSR EVIEGFREKY PAVEILQGYG
301: LTETTGIGAS TDSAEESRRY GTAGMLSPNT EARIVDPDSG AALPVNRTGE LWLRGPYVMK EYFKKPEATR TTLVEDGWLR TGDLCYIDED GYLFVVDRLK
401: ELIKYKGYQV APAELEALLL THPDIADAAV IPYPDKEAGQ IPMAYVVRKD GSNLSEEEVI KFVGRQVAPY KRIRKVAFVS AIPKNPSGKI LRKDLVKLAT
501: SKL

Best Arabidopsis Sequence Match ( AT1G20510.1 )
(BLAST)

001: MASVNSRSGF CNSNSTFYSK RTPIPLPPNP SLDVTTFISS QAHRGRIAFI DASTGQNLTF TELWRAVESV ADCLSEIGIR KGHVVLLLSP NSILFPVVCL
101: SVMSLGAIIT TTNPLNTSNE IAKQIKDSNP VLAFTTSQLL PKISAAAKKL PIVLMDEERV DSVGDVRRLV EMMKKEPSGN RVKERVDQDD TATLLYSSGT
201: TGMSKGVISS HRNLIAMVQT IVNRFGSDDG EQRFICTVPM FHIYGLAAFA TGLLAYGSTI IVLSKFEMHE MMSAIGKYQA TSLPLVPPIL VAMVNGADQI
301: KAKYDLSSMH TVLCGGAPLS KEVTEGFAEK YPTVKILQGY GLTESTGIGA STDTVEESRR YGTAGKLSAS MEGRIVDPVT GQILGPKQTG ELWLKGPSIM
401: KGYFSNEEAT SSTLDSEGWL RTGDLCYIDE DGFIFVVDRL KELIKYKGYQ VAPAELEALL LTHPEITDAA VIPFPDKEVG QFPMAYVVRK TGSSLSEKTI
501: MEFVAKQVAP YKRIRKVAFV SSIPKNPSGK ILRKDLIKIA TSNSKL

Arabidopsis Description

4CLL54-coumarate--CoA ligase-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q84P21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.