Factsheet for Solyc12g094520.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
peroxisome 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075394	Potato	peroxisome, plastid	97.46	97.46
VIT_18s0001g00290.t01	Wine grape	peroxisome	77.5	77.78
AT1G20510.1	Thale cress	plastid	74.95	75.64
CDY33631	Canola	plastid	73.87	73.6
CDX96633	Canola	plastid	73.32	73.06
Bra016463.1-P	Field mustard	plastid	73.14	72.88
KRH17509	Soybean	peroxisome, plastid	72.6	72.86
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	70.96	71.22
GSMUA_Achr8P13230_001	Banana	peroxisome	62.98	68.99
EER95569	Sorghum	peroxisome	64.61	64.38
HORVU4Hr1G081940.3	Barley	peroxisome	64.25	64.36
Zm00001d027519_P001	Maize	plasma membrane	64.07	64.07
TraesCS5A01G498800.1	Wheat	peroxisome	64.07	63.95
Os03t0132000-01	Rice	plasma membrane	64.07	63.95
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	63.88	63.77
TraesCS4D01G323500.1	Wheat	plastid	63.52	63.52
AT1G20500.1	Thale cress	plastid	62.98	63.09
CDY31883	Canola	plastid	61.16	62.06
Bra012232.1-P	Field mustard	peroxisome, plastid	61.71	61.93
CDY01370	Canola	peroxisome, plastid	61.71	61.82
CDY29527	Canola	peroxisome	59.17	61.51
CDY31472	Canola	peroxisome	57.35	61.48
Bra012233.1-P	Field mustard	plastid	60.44	61.44
CDY01369	Canola	plastid	60.44	61.33
Bra016464.1-P	Field mustard	plastid	61.71	60.61
Bra025822.1-P	Field mustard	peroxisome	59.71	60.59
CDX96637	Canola	plastid	60.8	60.58
AT1G20480.1	Thale cress	peroxisome	61.89	60.35
CDY33628	Canola	plastid	60.44	60.33
CDX96636	Canola	golgi, vacuole	41.92	60.31
CDX96638	Canola	peroxisome	57.17	59.77
AT5G38120.1	Thale cress	plastid	59.53	59.64
Bra016466.1-P	Field mustard	peroxisome	59.17	59.49
Bra016465.1-P	Field mustard	plastid	52.63	59.06
CDY33627	Canola	peroxisome	56.99	56.37
CDY31474	Canola	peroxisome	59.17	56.21
AT1G20490.2	Thale cress	peroxisome	43.74	53.91
CDY33629	Canola	golgi, vacuole	40.29	52.48
Solyc03g111170.2.1	Tomato	nucleus	45.19	45.11
Solyc11g069050.1.1	Tomato	peroxisome	42.29	43.31
Solyc11g007970.1.1	Tomato	peroxisome	43.74	42.65
Solyc08g076300.2.1	Tomato	peroxisome	42.65	40.94
Solyc03g117870.2.1	Tomato	plastid	38.84	39.27
Solyc12g042460.1.1	Tomato	peroxisome	38.29	38.5
Solyc06g068650.2.1	Tomato	peroxisome	37.93	38.49
Solyc07g008360.1.1	Tomato	peroxisome	37.57	36.44
Solyc03g097030.2.1	Tomato	peroxisome	37.39	36.14
Solyc02g088710.2.1	Tomato	peroxisome	34.85	34.72

Protein Annotations

MapMan:11.7.1.7	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611
GO:GO:0009695	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	UniProt:K4DH24	PFAM:PF00501
PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF186	SUPFAM:SSF56801	EnsemblPlantsGene:Solyc12g094520.1
EnsemblPlants:Solyc12g094520.1.1	TMHMM:TMhelix	UniParc:UPI0002769893	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:64735475..64739117

Molecular Weight (calculated)

59868.4 Da

IEP (calculated)

8.856

GRAVY (calculated)

0.027

Length

551 amino acids

Sequence
(BLAST)

001: MAQYNNNSTV DPKSGYSPAN STFYSKRRPI PFPANESIDV TTFISSRAHS GKIAFIDATT GRKLSFSDVW NAVESLATSL SVDMSIRKGD VVLLLSPNSI
101: FFPIICLAVM SLGAIITTTN PLNTNSEIAK QIKDSNPVLA FTIPQLLPKL TGFNLPVILI DGVNDSNSNL KIVGDLQKLI QRKPSESRLK ERVTQNDVAT
201: LLYSSGTTGA SKGVISSHKN LIAMVQTIVS RFNLDEGVQT FICTVPMFHI YGLAAFAAGL LASGSTVVVL SKFEMDEMLS SIHKYKATSL PLVPPILVAL
301: VNNADWIKKK YDLSSLESVL SGGAPLSKEV IEGFVEKYPS VRILQGYGLT ESTGIGASTD SLEESRRYGT AGMLSPSMEG KIVDPESGKA LPVNKTGELW
401: LRGPTIMKGY FSNEEATAST LDSDGWLRTG DLCYIDEDGF IFVVDRLKEL IKYKGYQVPP AELEALLLTH PEISDAAVIP FPDKEVGQFP MAYVVRKTGS
501: TISESAVMDF IAKQVAPYKR IRRVAFVASI PKNPSGKILR KDLIKLATSK L

Best Arabidopsis Sequence Match ( AT1G20510.1 )
(BLAST)

001: MASVNSRSGF CNSNSTFYSK RTPIPLPPNP SLDVTTFISS QAHRGRIAFI DASTGQNLTF TELWRAVESV ADCLSEIGIR KGHVVLLLSP NSILFPVVCL
101: SVMSLGAIIT TTNPLNTSNE IAKQIKDSNP VLAFTTSQLL PKISAAAKKL PIVLMDEERV DSVGDVRRLV EMMKKEPSGN RVKERVDQDD TATLLYSSGT
201: TGMSKGVISS HRNLIAMVQT IVNRFGSDDG EQRFICTVPM FHIYGLAAFA TGLLAYGSTI IVLSKFEMHE MMSAIGKYQA TSLPLVPPIL VAMVNGADQI
301: KAKYDLSSMH TVLCGGAPLS KEVTEGFAEK YPTVKILQGY GLTESTGIGA STDTVEESRR YGTAGKLSAS MEGRIVDPVT GQILGPKQTG ELWLKGPSIM
401: KGYFSNEEAT SSTLDSEGWL RTGDLCYIDE DGFIFVVDRL KELIKYKGYQ VAPAELEALL LTHPEITDAA VIPFPDKEVG QFPMAYVVRK TGSSLSEKTI
501: MEFVAKQVAP YKRIRKVAFV SSIPKNPSGK ILRKDLIKIA TSNSKL

Arabidopsis Description

4CLL54-coumarate--CoA ligase-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q84P21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.