Factsheet for Bra016463.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1
peroxisome 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96633	Canola	plastid	99.46	99.46
AT1G20510.1	Thale cress	plastid	89.33	90.48
VIT_18s0001g00290.t01	Wine grape	peroxisome	73.96	74.5
PGSC0003DMT400075394	Potato	peroxisome, plastid	73.06	73.32
KRH17509	Soybean	peroxisome, plastid	72.69	73.22
Solyc12g094520.1.1	Tomato	plastid	72.88	73.14
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	68.54	69.03
GSMUA_Achr8P13230_001	Banana	peroxisome	62.21	68.39
Bra012233.1-P	Field mustard	plastid	66.0	67.34
Bra012232.1-P	Field mustard	peroxisome, plastid	66.18	66.67
Bra016464.1-P	Field mustard	plastid	65.64	64.71
HORVU4Hr1G081940.3	Barley	peroxisome	64.2	64.55
TraesCS5A01G498800.1	Wheat	peroxisome	64.38	64.49
TraesCS4D01G323500.1	Wheat	plastid	64.01	64.25
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	64.01	64.13
Bra025822.1-P	Field mustard	peroxisome	62.93	64.09
Bra016465.1-P	Field mustard	plastid	56.78	63.95
Zm00001d027519_P001	Maize	plasma membrane	63.29	63.52
EER95569	Sorghum	peroxisome	63.29	63.29
Bra016466.1-P	Field mustard	peroxisome	62.21	62.77
Os03t0132000-01	Rice	plasma membrane	62.21	62.32
Bra029229.1-P	Field mustard	peroxisome	45.03	44.54
Bra029561.1-P	Field mustard	peroxisome	40.87	41.7
Bra013369.1-P	Field mustard	peroxisome, plastid	40.51	39.09
Bra030429.1-P	Field mustard	peroxisome	37.61	37.68
Bra031266.1-P	Field mustard	peroxisome	37.07	37.14
Bra004109.1-P	Field mustard	peroxisome	36.53	36.33
Bra031263.1-P	Field mustard	peroxisome	36.17	36.17
Bra001820.1-P	Field mustard	peroxisome	37.25	35.21
Bra001819.1-P	Field mustard	peroxisome	36.35	35.02
Bra029560.1-P	Field mustard	peroxisome	33.45	34.64
Bra031265.1-P	Field mustard	peroxisome	34.9	34.53
Bra036646.1-P	Field mustard	peroxisome	34.9	13.05

Protein Annotations

MapMan:11.7.1.7	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
EnsemblPlantsGene:Bra016463	EnsemblPlants:Bra016463.1	EnsemblPlants:Bra016463.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009695	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	UniProt:M4DIY6	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096
PANTHER:PTHR24096:SF186	SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI0002546B65	:	:

Description

AT1G20510 (E=1e-285) OPCL1 | OPCL1 (OPC-8:0 COA LIGASE1); 4-coumarate-CoA ligase

Coordinates

chrA08:+:18592551..18594657

Molecular Weight (calculated)

59830.5 Da

IEP (calculated)

8.511

GRAVY (calculated)

-0.006

Length

553 amino acids

Sequence
(BLAST)

001: MASVDSRSGF CNSNSTFYSK RKPIPLPPNP SLDVTTFISS QAHLGRTAFI DASTGKNLTF AELWRAVESV GDCLSDMGIR KGHVVLLLSP NSILFPVVCL
101: SVMSLGAVIT TTNPLNTAAE IAKQIKDSNP VMAFTTAELL PKIAAASGGS KKRLPIVLMD EERVDSAGEV RRLAEMMRRE PSGTRVAERV DQDDTATLLY
201: SSGTTGMSKG VVSSHRNLIT MVQTVVNRFG SDVGSQGEQR FICTVPMFHI YGLAAFATGL LAYGSTIIVL SKFEMGEMLS AIGKYQATYL PLVPPILVAM
301: VNGAEQINAK YDLSSLHTVL CGGAPLSKEV TEGFMDKYPT VKILQGYGLT ESTGIGASTD TVEESRRYGT AGKLSASMEG RIVDPVTGRV LGPNRTGELW
401: LKGPSIMKGY FSNEEATSST IDSEGWLRTG DLCYIDEDGF IFVVDRLKEL IKYKGYQVPP AELEALLLTH PEIADAAVIP FPDREVGQFP MAYVVKKTGS
501: LLSEKSVMEF VSKQVAPYKR VRKVAFVSSI PKNPSGKILR KDLIKLATSN SKL

Best Arabidopsis Sequence Match ( AT1G20510.1 )
(BLAST)

001: MASVNSRSGF CNSNSTFYSK RTPIPLPPNP SLDVTTFISS QAHRGRIAFI DASTGQNLTF TELWRAVESV ADCLSEIGIR KGHVVLLLSP NSILFPVVCL
101: SVMSLGAIIT TTNPLNTSNE IAKQIKDSNP VLAFTTSQLL PKISAAAKKL PIVLMDEERV DSVGDVRRLV EMMKKEPSGN RVKERVDQDD TATLLYSSGT
201: TGMSKGVISS HRNLIAMVQT IVNRFGSDDG EQRFICTVPM FHIYGLAAFA TGLLAYGSTI IVLSKFEMHE MMSAIGKYQA TSLPLVPPIL VAMVNGADQI
301: KAKYDLSSMH TVLCGGAPLS KEVTEGFAEK YPTVKILQGY GLTESTGIGA STDTVEESRR YGTAGKLSAS MEGRIVDPVT GQILGPKQTG ELWLKGPSIM
401: KGYFSNEEAT SSTLDSEGWL RTGDLCYIDE DGFIFVVDRL KELIKYKGYQ VAPAELEALL LTHPEITDAA VIPFPDKEVG QFPMAYVVRK TGSSLSEKTI
501: MEFVAKQVAP YKRIRKVAFV SSIPKNPSGK ILRKDLIKIA TSNSKL

Arabidopsis Description

4CLL54-coumarate--CoA ligase-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q84P21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.