Factsheet for VIT_18s0001g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 3
peroxisome 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	81.06	81.06
Solyc12g094520.1.1	Tomato	plastid	77.78	77.5
PGSC0003DMT400075394	Potato	peroxisome, plastid	77.05	76.77
CDY33631	Canola	plastid	75.23	74.68
AT1G20510.1	Thale cress	plastid	73.77	74.18
CDX96633	Canola	plastid	74.5	73.96
Bra016463.1-P	Field mustard	plastid	74.5	73.96
KRH17509	Soybean	peroxisome, plastid	73.04	73.04
GSMUA_Achr8P13230_001	Banana	peroxisome	63.21	68.99
AT1G20500.1	Thale cress	plastid	65.57	65.45
CDY31883	Canola	plastid	64.48	65.19
Bra012233.1-P	Field mustard	plastid	64.12	64.94
Bra012232.1-P	Field mustard	peroxisome, plastid	64.85	64.85
CDY01369	Canola	plastid	64.12	64.83
CDY01370	Canola	peroxisome, plastid	64.85	64.73
CDY33628	Canola	plastid	64.85	64.49
CDX96637	Canola	plastid	64.66	64.2
TraesCS5A01G498800.1	Wheat	peroxisome	63.93	63.59
TraesCS4D01G323500.1	Wheat	plastid	63.75	63.52
Os03t0132000-01	Rice	plasma membrane	63.75	63.41
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	63.75	63.41
AT5G38120.1	Thale cress	plastid	63.39	63.27
HORVU4Hr1G081940.3	Barley	peroxisome	63.21	63.09
Zm00001d027519_P001	Maize	plasma membrane	63.02	62.79
EER95569	Sorghum	peroxisome	63.21	62.75
Bra016464.1-P	Field mustard	plastid	64.12	62.75
Bra016465.1-P	Field mustard	plastid	56.1	62.73
CDY31472	Canola	peroxisome	58.29	62.26
AT1G20480.1	Thale cress	peroxisome	63.93	62.12
CDX96636	Canola	golgi, vacuole	43.17	61.88
Bra025822.1-P	Field mustard	peroxisome	61.02	61.69
CDY29527	Canola	peroxisome	59.38	61.51
CDX96638	Canola	peroxisome	58.29	60.72
Bra016466.1-P	Field mustard	peroxisome	60.29	60.4
CDY31474	Canola	peroxisome	62.66	59.31
AT1G20490.2	Thale cress	peroxisome	46.99	57.72
CDY33627	Canola	peroxisome	58.47	57.63
CDY33629	Canola	golgi, vacuole	42.62	55.32
VIT_17s0000g01790.t01	Wine grape	peroxisome, plastid	46.81	46.73
VIT_13s0019g05260.t01	Wine grape	peroxisome	42.99	45.74
VIT_14s0171g00300.t01	Wine grape	peroxisome	44.81	45.3
VIT_01s0010g02740.t01	Wine grape	peroxisome, plastid	44.44	44.36
VIT_14s0171g00290.t01	Wine grape	peroxisome	43.35	43.99
VIT_06s0061g00450.t01	Wine grape	peroxisome	42.26	42.65
VIT_08s0007g05050.t01	Wine grape	plastid	39.71	41.13
VIT_02s0109g00250.t01	Wine grape	peroxisome, plastid	39.53	38.0
VIT_11s0052g01090.t01	Wine grape	peroxisome	36.07	36.13
VIT_16s0039g02040.t01	Wine grape	peroxisome	36.07	36.13
VIT_01s0010g03720.t01	Wine grape	peroxisome	35.88	35.5
VIT_11s0052g01110.t01	Wine grape	peroxisome	34.06	34.69

Protein Annotations

EntrezGene:100243654	wikigene:100243654	MapMan:11.7.1.7	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	EMBL:AM444260
InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ProteinID:CAN74074	ProteinID:CAN74074.1	ProteinID:CCB45392
ProteinID:CCB45392.1	UniProt:F6H0C0	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100243654	wikigene:LOC100243654
PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF186	SUPFAM:SSF56801
TIGR:TC58582	TMHMM:TMhelix	UniParc:UPI00015C8262	ArrayExpress:VIT_18s0001g00290	EnsemblPlantsGene:VIT_18s0001g00290	EnsemblPlants:VIT_18s0001g00290.t01
unigene:Vvi.15938	RefSeq:XP_002285920	RefSeq:XP_002285920.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:+:1253932..1257727

Molecular Weight (calculated)

59275.8 Da

IEP (calculated)

8.326

GRAVY (calculated)

0.038

Length

549 amino acids

Sequence
(BLAST)

001: MAHNSELMVD PRSGFCRSNS VFYSKRNPVS LPQKEFIDVT TFISSRPHPG KTAFIDAASG HRLSFYEVWR AVDAVSSCLA DMGIRKGHVI LLLSPNSILF
101: PIVCLSVMSL GAVITTTNPL NTAREIGKQI ADSKPVLAFT IPSLVPKLAG SNLPIVLMGG EGNTPAPAGV VGSLEEMMRR EPSGKRVGER VNQEDTATLL
201: YSSGTTGASK GVVSSHRNLI AMVQTIVSRF SSEDGEQTFI CTVPMFHIYG LAAFAMGMLA SGSTVVVLSR FEMDEMLSSI SKYRATCLPL VPPILVALVH
301: SADKIKAKYD LNSLQSTLSG GAPLSKEVIE GFAEKYPSVK ILQGYGLTES TGIGASTDSL EESRRYGTAG LLSPSMEAKI VDPGSGKALT VNQTGELWLR
401: GPTIMKGYFS NPEVTTSTLD SSGWLRTGDL CYIDDDGFIF IVDRLKELIK YKGYQVPPAE LEALLLTHPE IADAAVIPFP DKEVGQYPMA YINRKAGSNL
501: SESAVMDFIA KQVAPYKRIR RVAFVDSIPK NASGKILRKD LIQLATSKL

Best Arabidopsis Sequence Match ( AT1G20510.1 )
(BLAST)

001: MASVNSRSGF CNSNSTFYSK RTPIPLPPNP SLDVTTFISS QAHRGRIAFI DASTGQNLTF TELWRAVESV ADCLSEIGIR KGHVVLLLSP NSILFPVVCL
101: SVMSLGAIIT TTNPLNTSNE IAKQIKDSNP VLAFTTSQLL PKISAAAKKL PIVLMDEERV DSVGDVRRLV EMMKKEPSGN RVKERVDQDD TATLLYSSGT
201: TGMSKGVISS HRNLIAMVQT IVNRFGSDDG EQRFICTVPM FHIYGLAAFA TGLLAYGSTI IVLSKFEMHE MMSAIGKYQA TSLPLVPPIL VAMVNGADQI
301: KAKYDLSSMH TVLCGGAPLS KEVTEGFAEK YPTVKILQGY GLTESTGIGA STDTVEESRR YGTAGKLSAS MEGRIVDPVT GQILGPKQTG ELWLKGPSIM
401: KGYFSNEEAT SSTLDSEGWL RTGDLCYIDE DGFIFVVDRL KELIKYKGYQ VAPAELEALL LTHPEITDAA VIPFPDKEVG QFPMAYVVRK TGSSLSEKTI
501: MEFVAKQVAP YKRIRKVAFV SSIPKNPSGK ILRKDLIKIA TSNSKL

Arabidopsis Description

4CLL54-coumarate--CoA ligase-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q84P21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.