Factsheet for VIT_02s0109g00250.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

plastid 4
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74284	Soybean	peroxisome	62.7	64.74
PGSC0003DMT400024014	Potato	peroxisome	64.27	63.94
Solyc08g076300.2.1	Tomato	peroxisome	63.92	63.59
AT4G19010.1	Thale cress	peroxisome, plastid	59.02	59.54
Bra013369.1-P	Field mustard	peroxisome, plastid	58.49	58.29
GSMUA_Achr11P...	Banana	peroxisome, plasma membrane	33.45	56.18
KRH39635	Soybean	cytosol, golgi, peroxisome	46.94	53.82
GSMUA_Achr11P...	Banana	peroxisome	50.96	53.49
TraesCS1D01G200200.1	Wheat	peroxisome	51.66	51.94
Os10t0578950-00	Rice	peroxisome	50.61	51.79
TraesCS1A01G196700.1	Wheat	peroxisome	51.31	51.58
TraesCS1B01G211300.1	Wheat	peroxisome	52.36	50.94
KXG38810	Sorghum	peroxisome	50.61	50.44
Os08t0143300-00	Rice	peroxisome, plastid	51.31	49.58
HORVU1Hr1G051190.2	Barley	peroxisome	51.49	46.23
Zm00001d030132_P002	Maize	peroxisome	50.79	45.6
CDX99401	Canola	peroxisome	52.01	44.46
VIT_13s0019g05260.t01	Wine grape	peroxisome	37.48	41.47
VIT_06s0061g00450.t01	Wine grape	peroxisome	38.88	40.81
VIT_17s0000g01790.t01	Wine grape	peroxisome, plastid	38.88	40.36
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	38.0	39.53
VIT_18s0001g00290.t01	Wine grape	peroxisome	38.0	39.53
VIT_14s0171g00300.t01	Wine grape	peroxisome	36.43	38.31
VIT_01s0010g02740.t01	Wine grape	peroxisome, plastid	36.6	38.0
VIT_08s0007g05050.t01	Wine grape	plastid	34.85	37.55
VIT_14s0171g00290.t01	Wine grape	peroxisome	34.68	36.6
VIT_11s0052g01110.t01	Wine grape	peroxisome	34.5	36.55
VIT_11s0052g01090.t01	Wine grape	peroxisome	35.03	36.5
VIT_16s0039g02040.t01	Wine grape	peroxisome	33.63	35.04
VIT_01s0010g03720.t01	Wine grape	peroxisome	29.77	30.63

Protein Annotations

EntrezGene:100261471	wikigene:100261471	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:35.1	InterPro:AMP-bd_C
InterPro:AMP-dep_Synth/Lig	ProteinID:CBI23270	ProteinID:CBI23270.3	UniProt:D7SYN3	EMBL:FN595250	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
EntrezGene:LOC100261471	wikigene:LOC100261471	PFAM:PF00501	PFAM:PF13193	PANTHER:PTHR24096	PANTHER:PTHR24096:SF261
SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI00015CD3C0	ArrayExpress:VIT_02s0109g00250	EnsemblPlantsGene:VIT_02s0109g00250	EnsemblPlants:VIT_02s0109g00250.t01
RefSeq:XP_002270360	RefSeq:XP_002270360.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:12710110..12715877

Molecular Weight (calculated)

61718.6 Da

IEP (calculated)

7.642

GRAVY (calculated)

0.115

Length

571 amino acids

Sequence
(BLAST)

001: MATPLNACAS SQNQATNTQR ASDNTHPNGH PHWFSPETGI YSSTYPSLPI PSDPHLDIVS FIFSKNHNGV SALTDYSSGF SISYSQLHPL VKSMASGLHQ
101: MGFSQGDVIL LLLPNSIYFP VIFLAVLSLG GIATTMNPLS SLTEIRKQTV GCSLSLAFTV PETSEKLGAL GVPVIGVPEN GSFNSKSKEF STFHWLISGD
201: PDCCPRPVIN QHDVAAIMYS SGTTGSTKAV VLTHGNFIAM VETFVRFEAS LYENSGSENV YLAVLPMFHI YGLSLFVTGL ISLGSAIVVM RKFDANEMVK
301: AIDRYRVTHF PVVPPVLMAL IKSARAAGAG CFGSLKQVCC GAAPLTQKSI QEFVQTLSHV DLIQGYGMTE STAVGTRGFN TKKLRNYSSI GLLAPNMRAK
401: VVDLSSGSLL PPGNCGELWL QGPGIMKGYL NDEEATISTI DKEGWLHTGD IVSFDQDGYL YMFSRIKEII KYKGFQIAPV DLESILISHP EISDAAVAGV
501: GDEEAGEVPV AFVVKRPGSA LSQAAIINYV EKQVAPYKKV RKVIFTHPIP KSAAGKILRR ELKHLFMISR I

Best Arabidopsis Sequence Match ( AT4G19010.1 )
(BLAST)

001: MAATHLHIPP NPKTQTSHQN PPFWFSSKTG IYTSKFPSLH LPVDPNLDAV SALFSHKHHG DTALIDSLTG FSISHTELQI MVQSMAAGIY HVLGVRQGDV
101: VSLVLPNSVY FPMIFLSLIS LGAIVTTMNP SSSLGEIKKQ VSECSVGLAF TSTENVEKLS SLGVSVISVS ESYDFDSIRI ENPKFYSIMK ESFGFVPKPL
201: IKQDDVAAIM YSSGTTGASK GVLLTHRNLI ASMELFVRFE ASQYEYPGSS NVYLAALPLC HIYGLSLFVM GLLSLGSTIV VMKRFDASDV VNVIERFKIT
301: HFPVVPPMLM ALTKKAKGVC GEVFKSLKQV SSGAAPLSRK FIEDFLQTLP HVDLIQGYGM TESTAVGTRG FNSEKLSRYS SVGLLAPNMQ AKVVDWSSGS
401: FLPPGNRGEL WIQGPGVMKG YLNNPKATQM SIVEDSWLRT GDIAYFDEDG YLFIVDRIKE IIKYKGFQIA PADLEAVLVS HPLIIDAAVT AAPNEECGEI
501: PVAFVVRRQE TTLSEEDVIS YVASQVAPYR KVRKVVMVNS IPKSPTGKIL RKELKRILTN SVSSRL

Arabidopsis Description

4CLL64-coumarate--CoA ligase-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q84P24]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.