Factsheet for VIT_11s0052g01110.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
extracellular 1
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g01090.t01	Wine grape	peroxisome	78.66	77.37
KRH02885	Soybean	peroxisome	73.1	73.51
KRH02884	Soybean	peroxisome	74.58	73.49
GSMUA_Achr1P23450_001	Banana	peroxisome	68.09	70.58
GSMUA_AchrUn_...	Banana	peroxisome	67.72	70.46
GSMUA_Achr9P22840_001	Banana	peroxisome	49.54	69.9
GSMUA_Achr7P05070_001	Banana	peroxisome	63.64	69.57
GSMUA_Achr4P05820_001	Banana	peroxisome	67.35	69.54
GSMUA_Achr4P12590_001	Banana	peroxisome	62.89	69.33
PGSC0003DMT400051216	Potato	peroxisome	72.73	68.65
Solyc07g008360.1.1	Tomato	peroxisome	72.17	68.49
EER90150	Sorghum	peroxisome	65.68	63.55
Os02t0177600-01	Rice	plasma membrane	65.12	63.36
TraesCS6B01G179900.2	Wheat	peroxisome	64.01	62.96
TraesCS6D01G141700.1	Wheat	peroxisome	63.82	62.66
TraesCS6A01G151700.1	Wheat	peroxisome	63.45	62.64
VIT_16s0039g02040.t01	Wine grape	peroxisome	63.64	62.59
Os06t0656500-01	Rice	peroxisome	64.56	62.25
TraesCS7D01G483400.1	Wheat	peroxisome	64.38	61.96
TraesCS7A01G496200.1	Wheat	peroxisome	64.01	61.94
HORVU6Hr1G030390.2	Barley	peroxisome	63.45	61.84
EES04623	Sorghum	peroxisome	63.64	61.8
TraesCS2B01G171200.1	Wheat	peroxisome	61.6	61.48
TraesCS2D01G150400.1	Wheat	peroxisome	61.41	61.3
TraesCS2A01G145800.1	Wheat	peroxisome	61.6	61.25
Os08t0448000-01	Rice	peroxisome	60.11	60.11
EES15085	Sorghum	peroxisome	61.22	59.78
Zm00001d032103_P001	Maize	peroxisome	61.41	59.64
HORVU7Hr1G111130.3	Barley	peroxisome, plastid	64.19	58.64
Os08t0245200-01	Rice	extracellular	60.85	58.16
Zm00001d015459_P003	Maize	peroxisome	62.89	57.75
Zm00001d050224_P002	Maize	peroxisome	57.7	55.54
Zm00001d046915_P001	Maize	extracellular	65.49	55.24
EES13602	Sorghum	peroxisome	57.88	54.64
VIT_06s0061g00450.t01	Wine grape	peroxisome	41.19	40.81
HORVU0Hr1G002720.3	Barley	mitochondrion, plastid	41.0	40.48
VIT_08s0007g05050.t01	Wine grape	plastid	37.85	38.49
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	37.66	36.98
VIT_14s0171g00290.t01	Wine grape	peroxisome	36.73	36.6
VIT_13s0019g05260.t01	Wine grape	peroxisome	34.88	36.43
VIT_01s0010g03720.t01	Wine grape	peroxisome	37.29	36.22
VIT_14s0171g00300.t01	Wine grape	peroxisome	35.25	34.99
VIT_02s0109g00250.t01	Wine grape	peroxisome, plastid	36.55	34.5
VIT_17s0000g01790.t01	Wine grape	peroxisome, plastid	34.88	34.18
VIT_18s0001g00290.t01	Wine grape	peroxisome	34.69	34.06
VIT_01s0010g02740.t01	Wine grape	peroxisome, plastid	33.58	32.91

Protein Annotations

EntrezGene:100265063	wikigene:100265063	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:7.8.1.1	MapMan:9.2.1.3
InterPro:AMP-bd_C	InterPro:AMP-dep_Synth/Lig	ProteinID:CCB44640	ProteinID:CCB44640.1	UniProt:F6GXF4	EMBL:FN594964
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	EntrezGene:LOC100265063	wikigene:LOC100265063
PFAM:PF00501	PFAM:PF13193	PANTHER:PTHR24096	PANTHER:PTHR24096:SF149	SUPFAM:SSF56801	UniParc:UPI00015CC3DB
ArrayExpress:VIT_11s0052g01110	EnsemblPlantsGene:VIT_11s0052g01110	EnsemblPlants:VIT_11s0052g01110.t01	RefSeq:XP_002269945	RefSeq:XP_002269945.1	:

Description

No Description!

Coordinates

chr11:-:18842882..18848139

Molecular Weight (calculated)

58877.4 Da

IEP (calculated)

5.247

GRAVY (calculated)

0.090

Length

539 amino acids

Sequence
(BLAST)

001: MEATQEFIYR SKLPDINIPS HLPLHSYCFQ HISKFSSNPC LINAGNGNIY TYADVHLTAR KVAAGLNRLG IRQGDAIMLL LQNCPEFVFS FLGASYLGAT
101: STTANPFYTP AEIEKQATAS SARIIITQAC FAEKVKKFAE ENDVKIICID EPVAGCLHFS ELSQADENDI PDVNISPDDV VALPYSSGTV GLPKGVMLTH
201: KSMITSVAQQ VDGENPNLYF HLDDVILCVL PMFHIYSLSS VVLCGLRVGA AILIMQKFEI NTLMELVQKH KVTIAPFVPP ILLAIAKSPV AHQYDLSSIR
301: TVISGAAPMG KELEDSLGSK LPNAVIGQGY GMTEAGPVLS MCLAFAKEPF EIKSGACGTV VRNAEMKIIN PETGASLPPN QAGEICIRGD QIMKGYLNDI
401: EATKEAIDEE KWLHTGDIGY IDDNDELFIV DRLKEIIKNR GFQVAPAELE AILIAHPNIV DAAVVPMKDE AAGEVPIAFI VRSNGFEITE DEIKEYIAKQ
501: VVYYKRIKRV FFIETIPKAP SGKILRKDLK AKLAAGFSN

Best Arabidopsis Sequence Match ( AT1G51680.1 )
(BLAST)

001: MAPQEQAVSQ VMEKQSNNNN SDVIFRSKLP DIYIPNHLSL HDYIFQNISE FATKPCLING PTGHVYTYSD VHVISRQIAA NFHKLGVNQN DVVMLLLPNC
101: PEFVLSFLAA SFRGATATAA NPFFTPAEIA KQAKASNTKL IITEARYVDK IKPLQNDDGV VIVCIDDNES VPIPEGCLRF TELTQSTTEA SEVIDSVEIS
201: PDDVVALPYS SGTTGLPKGV MLTHKGLVTS VAQQVDGENP NLYFHSDDVI LCVLPMFHIY ALNSIMLCGL RVGAAILIMP KFEINLLLEL IQRCKVTVAP
301: MVPPIVLAIA KSSETEKYDL SSIRVVKSGA APLGKELEDA VNAKFPNAKL GQGYGMTEAG PVLAMSLGFA KEPFPVKSGA CGTVVRNAEM KIVDPDTGDS
401: LSRNQPGEIC IRGHQIMKGY LNNPAATAET IDKDGWLHTG DIGLIDDDDE LFIVDRLKEL IKYKGFQVAP AELEALLIGH PDITDVAVVA MKEEAAGEVP
501: VAFVVKSKDS ELSEDDVKQF VSKQVVFYKR INKVFFTESI PKAPSGKILR KDLRAKLANG L

Arabidopsis Description

4CL14-coumarate-CoA ligase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1P8SNN0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.