Factsheet for VIT_11s0052g01090.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
vacuole 1
peroxisome 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g01110.t01	Wine grape	peroxisome	77.37	78.66
KRH02885	Soybean	peroxisome	75.18	76.87
KRH02884	Soybean	peroxisome	76.46	76.6
GSMUA_Achr9P22840_001	Banana	peroxisome	52.92	75.92
GSMUA_Achr4P12590_001	Banana	peroxisome	66.42	74.44
GSMUA_AchrUn_...	Banana	peroxisome	70.07	74.13
GSMUA_Achr1P23450_001	Banana	peroxisome	70.07	73.85
GSMUA_Achr4P05820_001	Banana	peroxisome	70.07	73.56
PGSC0003DMT400051216	Potato	peroxisome	75.91	72.85
GSMUA_Achr7P05070_001	Banana	peroxisome	65.33	72.62
Solyc07g008360.1.1	Tomato	peroxisome	75.0	72.36
EER90150	Sorghum	peroxisome	67.7	66.61
TraesCS6B01G179900.2	Wheat	peroxisome	65.88	65.88
TraesCS6D01G141700.1	Wheat	peroxisome	65.69	65.57
TraesCS6A01G151700.1	Wheat	peroxisome	65.33	65.57
Os02t0177600-01	Rice	plasma membrane	65.88	65.16
Os06t0656500-01	Rice	peroxisome	66.24	64.94
HORVU6Hr1G030390.2	Barley	peroxisome	65.33	64.74
TraesCS7A01G496200.1	Wheat	peroxisome	65.51	64.45
VIT_16s0039g02040.t01	Wine grape	peroxisome	64.42	64.42
Os08t0448000-01	Rice	peroxisome	63.32	64.38
EES04623	Sorghum	peroxisome	65.15	64.32
TraesCS7D01G483400.1	Wheat	peroxisome	65.69	64.29
TraesCS2B01G171200.1	Wheat	peroxisome	62.96	63.89
TraesCS2A01G145800.1	Wheat	peroxisome	63.14	63.84
TraesCS2D01G150400.1	Wheat	peroxisome	62.77	63.7
EES15085	Sorghum	peroxisome	62.77	62.32
Zm00001d032103_P001	Maize	peroxisome	62.59	61.8
HORVU7Hr1G111130.3	Barley	peroxisome, plastid	66.24	61.53
Zm00001d015459_P003	Maize	peroxisome	65.33	60.99
Os08t0245200-01	Rice	extracellular	60.04	58.33
Zm00001d046915_P001	Maize	extracellular	67.15	57.59
Zm00001d050224_P002	Maize	peroxisome	58.39	57.14
EES13602	Sorghum	peroxisome	58.03	55.69
VIT_06s0061g00450.t01	Wine grape	peroxisome	40.88	41.18
HORVU0Hr1G002720.3	Barley	mitochondrion, plastid	40.88	41.03
VIT_01s0010g03720.t01	Wine grape	peroxisome	38.14	37.66
VIT_08s0007g05050.t01	Wine grape	plastid	36.31	37.55
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	36.86	36.79
VIT_18s0001g00290.t01	Wine grape	peroxisome	36.13	36.07
VIT_14s0171g00290.t01	Wine grape	peroxisome	35.22	35.67
VIT_13s0019g05260.t01	Wine grape	peroxisome	33.58	35.66
VIT_17s0000g01790.t01	Wine grape	peroxisome, plastid	35.22	35.09
VIT_02s0109g00250.t01	Wine grape	peroxisome, plastid	36.5	35.03
VIT_14s0171g00300.t01	Wine grape	peroxisome	33.58	33.89
VIT_01s0010g02740.t01	Wine grape	peroxisome, plastid	31.02	30.91

Protein Annotations

EntrezGene:100254698	wikigene:100254698	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:7.8.1.1	MapMan:9.2.1.3
ProteinID:ABG67922	ProteinID:ABG67922.1	EMBL:AM428701	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
ProteinID:CAN69130	ProteinID:CAN69130.1	ProteinID:CCB44641	ProteinID:CCB44641.1	EMBL:DQ667963	UniProt:F6GXF5
EMBL:FN594964	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	EntrezGene:LOC100254698
wikigene:LOC100254698	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF149
SUPFAM:SSF56801	TIGR:TC60943	UniParc:UPI00015CC3D9	ArrayExpress:VIT_11s0052g01090	EnsemblPlantsGene:VIT_11s0052g01090	EnsemblPlants:VIT_11s0052g01090.t01
unigene:Vvi.10434	RefSeq:XP_002272782	RefSeq:XP_002272782.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:+:18816741..18820341

Molecular Weight (calculated)

60379.3 Da

IEP (calculated)

5.404

GRAVY (calculated)

-0.031

Length

548 amino acids

Sequence
(BLAST)

001: MEVKKEEQPQ QQQTEIIFRS KLPDIYIPDH LPLHSYCFEN ISKFSSRPCV IDGANGDIYT YADVELTARR VGAGLHKMGI KQGEVIMLLL QNCTEFVFAF
101: LGASYIGATS TTANPFYMPA EIEKQAKASK CRLIITQACY SEKAMSFAEE NDVKVMCIDT PPEGCLHFSE LTNADEADLP TVKINPDDVV ALPYSSGTTG
201: LPKGVMLTHR GQVTSVAQQV DGDNPNLYFH SEDVILCVLP LFHVYSLNSV LLCGLRVGAA ILIMQKFEII KLLELINKYK VTIAPFVPPI VLAIAKSPVV
301: DEYDLSSIRT VMSGAAPMGK ELEDTVRAKL PNAKLGQGYG MTEAGPVLAM CLAFAKEPFE IKSGSCGTVV RNAQMKILDP DTGASLPRNQ PGEICIRGHQ
401: IMKGYLNDPE ATERTIDKEG WLHTGDIGYI DDDDELFIVD RLKELIKYKG FQVAPAELEA MLIAHPNVSD AAVVSMKDEA AGEVPVAFIV RSNGSKITED
501: EIKQYISKQV VFYKRIYRVF FVETIPKAPS GKILRKDLRA RLAVGVPN

Best Arabidopsis Sequence Match ( AT1G51680.1 )
(BLAST)

001: MAPQEQAVSQ VMEKQSNNNN SDVIFRSKLP DIYIPNHLSL HDYIFQNISE FATKPCLING PTGHVYTYSD VHVISRQIAA NFHKLGVNQN DVVMLLLPNC
101: PEFVLSFLAA SFRGATATAA NPFFTPAEIA KQAKASNTKL IITEARYVDK IKPLQNDDGV VIVCIDDNES VPIPEGCLRF TELTQSTTEA SEVIDSVEIS
201: PDDVVALPYS SGTTGLPKGV MLTHKGLVTS VAQQVDGENP NLYFHSDDVI LCVLPMFHIY ALNSIMLCGL RVGAAILIMP KFEINLLLEL IQRCKVTVAP
301: MVPPIVLAIA KSSETEKYDL SSIRVVKSGA APLGKELEDA VNAKFPNAKL GQGYGMTEAG PVLAMSLGFA KEPFPVKSGA CGTVVRNAEM KIVDPDTGDS
401: LSRNQPGEIC IRGHQIMKGY LNNPAATAET IDKDGWLHTG DIGLIDDDDE LFIVDRLKEL IKYKGFQVAP AELEALLIGH PDITDVAVVA MKEEAAGEVP
501: VAFVVKSKDS ELSEDDVKQF VSKQVVFYKR INKVFFTESI PKAPSGKILR KDLRAKLANG L

Arabidopsis Description

4CL14-coumarate-CoA ligase 1 [Source:UniProtKB/TrEMBL;Acc:A0A1P8SNN0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.