Factsheet for VIT_01s0010g02740.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

plastid 4
peroxisome 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0171g00300.t01	Wine grape	peroxisome	56.36	57.09
VIT_17s0000g01790.t01	Wine grape	peroxisome, plastid	54.55	54.55
VIT_14s0171g00290.t01	Wine grape	peroxisome	52.73	53.6
TraesCS4D01G074500.1	Wheat	plastid	49.64	50.28
TraesCS4A01G239100.2	Wheat	plastid	49.27	49.91
TraesCS4B01G075900.1	Wheat	plastid	49.09	49.72
EER97853	Sorghum	peroxisome, plastid	49.45	49.19
TraesCS3A01G394300.1	Wheat	peroxisome	48.73	47.86
TraesCS3B01G426300.1	Wheat	peroxisome	48.73	47.69
EES01913	Sorghum	peroxisome, plastid	47.82	47.39
TraesCS3D01G388100.1	Wheat	peroxisome	48.36	47.33
GSMUA_Achr5P25570_001	Banana	peroxisome	47.45	47.28
Zm00001d018660_P001	Maize	peroxisome	48.36	47.25
HORVU4Hr1G012630.3	Barley	peroxisome	49.27	47.21
TraesCS3A01G394200.1	Wheat	peroxisome, plastid	46.91	46.24
OQU88316	Sorghum	peroxisome, plastid	50.0	45.99
Os07t0280200-01	Rice	peroxisome	46.55	45.88
TraesCS3B01G426200.1	Wheat	peroxisome, plastid	46.18	45.36
GSMUA_Achr1P13470_001	Banana	peroxisome	42.55	45.35
HORVU3Hr1G089000.2	Barley	peroxisome, plastid	48.0	45.05
HORVU4Hr1G012660.1	Barley	peroxisome	44.0	44.73
HORVU4Hr1G012680.8	Barley	peroxisome	45.09	44.52
VIT_18s0001g00290.t01	Wine grape	peroxisome	44.36	44.44
TraesCS4A01G239000.1	Wheat	peroxisome	44.36	44.28
TraesCS4D01G074600.1	Wheat	peroxisome	44.36	44.28
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	44.18	44.26
KXG38162	Sorghum	peroxisome	45.09	44.05
TraesCS4B01G076000.1	Wheat	peroxisome	44.0	43.92
Os01t0901500-01	Rice	plastid	35.27	43.89
TraesCS3B01G515400.1	Wheat	peroxisome	43.82	43.82
Os01t0901600-01	Rice	peroxisome, plastid	47.64	43.81
EER98656	Sorghum	peroxisome, plastid	44.18	43.78
TraesCS4D01G074700.1	Wheat	peroxisome	43.45	43.77
TraesCS4B01G076100.1	Wheat	peroxisome	43.09	43.65
TraesCS3A01G472200.1	Wheat	peroxisome	43.64	43.64
Zm00001d019957_P002	Maize	peroxisome	44.91	43.41
TraesCS5B01G570100.1	Wheat	peroxisome	43.45	43.14
TraesCS5D01G561500.1	Wheat	peroxisome	43.27	42.88
TraesCS3D01G468000.1	Wheat	peroxisome	43.09	42.78
TraesCS3D01G388000.2	Wheat	peroxisome, plastid	45.64	42.11
HORVU3Hr1G100420.4	Barley	peroxisome, plastid	44.36	42.07
VIT_13s0019g05260.t01	Wine grape	peroxisome	39.45	42.05
Zm00001d012144_P001	Maize	plastid	30.91	41.46
VIT_06s0061g00450.t01	Wine grape	peroxisome	37.64	38.05
VIT_08s0007g05050.t01	Wine grape	plastid	36.55	37.92
VIT_02s0109g00250.t01	Wine grape	peroxisome, plastid	38.0	36.6
TraesCS4A01G238800.1	Wheat	plastid	28.18	35.88
VIT_11s0052g01110.t01	Wine grape	peroxisome	32.91	33.58
VIT_01s0010g03720.t01	Wine grape	peroxisome	32.55	32.25
VIT_16s0039g02040.t01	Wine grape	peroxisome	31.82	31.93
VIT_11s0052g01090.t01	Wine grape	peroxisome	30.91	31.02

Protein Annotations

EntrezGene:100266547	wikigene:100266547	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:35.1	EMBL:AM467421
InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ProteinID:CAN65888	ProteinID:CAN65888.1	ProteinID:CBI27575
ProteinID:CBI27575.3	UniProt:D7TAQ2	EMBL:FN595754	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	EntrezGene:LOC100266547	wikigene:LOC100266547	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455
PANTHER:PTHR24096	PANTHER:PTHR24096:SF255	SUPFAM:SSF56801	UniParc:UPI00015CB63F	ArrayExpress:VIT_01s0010g02740	EnsemblPlantsGene:VIT_01s0010g02740
EnsemblPlants:VIT_01s0010g02740.t01	RefSeq:XP_002265545	RefSeq:XP_002265545.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:19768972..19771314

Molecular Weight (calculated)

59673.2 Da

IEP (calculated)

8.656

GRAVY (calculated)

0.054

Length

550 amino acids

Sequence
(BLAST)

001: MADLNPNHSS SIYPNTGFCS KTMIYHSLRP HPPLPPETAP LSLSDYVFSH LSTSSAPETA VAFIDATTGR SISFSQLVRF SETLAASLQR RLGLTRGDSA
101: LVISPNSLHV PVLYFALFSL GVIVSPSNPA STESEISRQI ELCKPVIAFA TSSTAHKVPS LKFSTVVLDS PEFHSMMTVE TGNLRRVRVS QSDPAMILYS
201: SGTTGRVKGV VLTHRNWISA VAGANVLRQE RASPTVTMCT VPYFHVYGCG LCMRAVALGQ SVVAIERLNV RSLMSAVQEF RVTHLAVAPP VIVMMANGGD
301: LVDGCDLRSL EAVLCGGAPV STAVIERFKK RFPNVLVTQA YGLTETTGGI SRTVGLEESQ RLGASGRLIP YCQAKIVDPD TGIALPPLRT GELWVRGPSI
401: MKGYVGNEEA TAEILDSEGW LRTGDICHFD RDGFIYVVDR IKELIKYKGY QVAPAELEHL LHSHPDTVEA AVIPYPDAQA GQVPMAFVVK RPQSTIDESE
501: IMDFIAKQVA PYKKIRRVSF INSIPKNATG KVLRKDLIKL ASSRSGCSKL

Best Arabidopsis Sequence Match ( AT5G63380.1 )
(BLAST)

001: MLTKTNDSRL IDRSSGFDQR TGIYHSLRPS LSLPPIDQPL SAAEFALSLL LKSSPPATAG KNIEALTYLV NSSSGDNLTY GELLRRVRSL AVSLRERFPS
101: LASRNVAFIL SPSSLDIPVL YLALMSIGVV VSPANPIGSE SEVSHQVEVS EPVIAFATSQ TVKKLQSSSL PLGTVLMDST EFLSWLNRSD SSSVNPFQVQ
201: VNQSDPAAIL FSSGTTGRVK GVLLTHRNLI ASTAVSHQRT LQDPVNYDRV GLFSLPLFHV FGFMMMIRAI SLGETLVLLG RFELEAMFKA VEKYKVTGMP
301: VSPPLIVALV KSELTKKYDL RSLRSLGCGG APLGKDIAER FKQKFPDVDI VQGYGLTESS GPAASTFGPE EMVKYGSVGR ISENMEAKIV DPSTGESLPP
401: GKTGELWLRG PVIMKGYVGN EKASAETVDK EGWLKTGDLC YFDSEDFLYI VDRLKELIKY KAYQVPPVEL EQILHSNPDV IDAAVVPFPD EDAGEIPMAF
501: IVRKPGSNLN EAQIIDFVAK QVTPYKKVRR VAFINAIPKN PAGKILRREL TKIAVDGNAS KL

Arabidopsis Description

4CLL94-coumarate--CoA ligase-like 9 [Source:UniProtKB/Swiss-Prot;Acc:Q84P23]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.