Factsheet for VIT_08s0007g05050.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
vacuole 1
peroxisome 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G072130.2	Barley	mitochondrion, peroxisome	27.74	64.47
VIT_06s0061g00450.t01	Wine grape	peroxisome	63.96	62.32
GSMUA_Achr5P19650_001	Banana	peroxisome	54.34	59.26
KXG40154	Sorghum	peroxisome	61.51	58.95
GSMUA_Achr8P14210_001	Banana	peroxisome	55.09	58.87
Zm00001d027711_P003	Maize	extracellular	60.75	58.02
Os03t0152400-01	Rice	plasma membrane	58.11	55.8
TraesCS4A01G036200.1	Wheat	peroxisome	57.55	55.56
TraesCS4B01G269200.1	Wheat	peroxisome	58.11	55.5
TraesCS4D01G268400.1	Wheat	peroxisome	57.17	55.39
OQU91476	Sorghum	peroxisome	57.92	55.12
Zm00001d033055_P001	Maize	peroxisome	57.17	55.09
VIT_13s0019g05260.t01	Wine grape	peroxisome	39.43	40.5
VIT_18s0001g00290.t01	Wine grape	peroxisome	41.13	39.71
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	40.38	38.98
VIT_17s0000g01790.t01	Wine grape	peroxisome, plastid	39.43	38.0
VIT_16s0039g02040.t01	Wine grape	peroxisome	39.25	37.96
VIT_11s0052g01110.t01	Wine grape	peroxisome	38.49	37.85
VIT_14s0171g00300.t01	Wine grape	peroxisome	37.92	37.02
VIT_01s0010g02740.t01	Wine grape	peroxisome, plastid	37.92	36.55
VIT_11s0052g01090.t01	Wine grape	peroxisome	37.55	36.31
VIT_14s0171g00290.t01	Wine grape	peroxisome	36.6	35.86
VIT_02s0109g00250.t01	Wine grape	peroxisome, plastid	37.55	34.85
VIT_01s0010g03720.t01	Wine grape	peroxisome	35.28	33.69
HORVU4Hr1G072150.1	Barley	peroxisome	33.96	32.32

Protein Annotations

Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:35.1	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
ProteinID:CCB55336	ProteinID:CCB55336.1	UniProt:F6HKB4	EMBL:FN595991	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	PFAM:PF00501
PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF302	SUPFAM:SSF56801	TMHMM:TMhelix
UniParc:UPI0002109337	ArrayExpress:VIT_08s0007g05050	EnsemblPlantsGene:VIT_08s0007g05050	EnsemblPlants:VIT_08s0007g05050.t01	SEG:seg	:

Description

No Description!

Coordinates

chr8:+:18961967..18973771

Molecular Weight (calculated)

58804.2 Da

IEP (calculated)

9.302

GRAVY (calculated)

0.055

Length

530 amino acids

Sequence
(BLAST)

001: MATSIVYRSP RPHVDIPNDP SISMLSFLFR KTSSFSTRLA LVDSDSGETL TFFQLKSTVS RLAHSFAQLG ITKNDVVLIF APNSVRFPVC FLAIVALGAI
101: ATTANPLYTI SELSKQVKDS NPKFVINLWD KVKNFDLTFV ILSSSASQRL PSSNSRVWYY SDLIKTPEDR DLDFPPASVV QTDTVALLYS SGTTGTSKGV
201: ILTHRNFIAA GVMVTADQAY YGESSNVFLC FLPMFHIFGL SVILYAQLVR GNTVVTVAKF EIEKVLRSVE KYRVTHMFVV HPVMIALAKQ SVVRKYDLSS
301: LRQICSGAAP LGKDVMDDCA KNVPQAAVIQ LHHDSKCTMW YSSSRHSGST GILVPRVESQ IVSEDTLKPL PPNQLGEIWV QGANMMQGYF NNPQATKLTI
401: DEQGWVRTGD LGYFDEGGQL FVVDRIKELI KFKGFQVAPA ELEGLLLSHP EILDSVVIPL PDVEAGEVPI AYVVRSPRSS LTEEDVQKFI AKQVAPFKRL
501: RRVTFINNVP KSASGKILRR ELIEKVRSKI

Best Arabidopsis Sequence Match ( AT4G05160.1 )
(BLAST)

001: MEKSGYGRDG IYRSLRPTLV LPKDPNTSLV SFLFRNSSSY PSKLAIADSD TGDSLTFSQL KSAVARLAHG FHRLGIRKND VVLIFAPNSY QFPLCFLAVT
101: AIGGVFTTAN PLYTVNEVSK QIKDSNPKII ISVNQLFDKI KGFDLPVVLL GSKDTVEIPP GSNSKILSFD NVMELSEPVS EYPFVEIKQS DTAALLYSSG
201: TTGTSKGVEL THGNFIAASL MVTMDQDLMG EYHGVFLCFL PMFHVFGLAV ITYSQLQRGN ALVSMARFEL ELVLKNIEKF RVTHLWVVPP VFLALSKQSI
301: VKKFDLSSLK YIGSGAAPLG KDLMEECGRN IPNVLLMQGY GMTETCGIVS VEDPRLGKRN SGSAGMLAPG VEAQIVSVET GKSQPPNQQG EIWVRGPNMM
401: KGYLNNPQAT KETIDKKSWV HTGDLGYFNE DGNLYVVDRI KELIKYKGFQ VAPAELEGLL VSHPDILDAV VIPFPDEEAG EVPIAFVVRS PNSSITEQDI
501: QKFIAKQVAP YKRLRRVSFI SLVPKSAAGK ILRRELVQQV RSKM

Arabidopsis Description

4CLL74-coumarate--CoA ligase-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0X9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.