Factsheet for VIT_18s0001g00280.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

plastid 4
peroxisome 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g00290.t01	Wine grape	peroxisome	81.06	81.06
Solyc12g094520.1.1	Tomato	plastid	71.22	70.96
PGSC0003DMT400075394	Potato	peroxisome, plastid	70.86	70.6
AT1G20510.1	Thale cress	plastid	69.03	69.41
CDY33631	Canola	plastid	69.4	68.9
CDX96633	Canola	plastid	69.22	68.72
Bra016463.1-P	Field mustard	plastid	69.03	68.54
KRH17509	Soybean	peroxisome, plastid	68.31	68.31
AT1G20500.1	Thale cress	plastid	65.03	64.91
Bra012232.1-P	Field mustard	peroxisome, plastid	63.57	63.57
CDY01370	Canola	peroxisome, plastid	63.57	63.45
CDY33628	Canola	plastid	63.57	63.22
GSMUA_Achr8P13230_001	Banana	peroxisome	57.92	63.22
CDX96637	Canola	plastid	63.02	62.57
CDY31883	Canola	plastid	61.57	62.25
Bra012233.1-P	Field mustard	plastid	61.38	62.18
CDY01369	Canola	plastid	61.38	62.06
AT5G38120.1	Thale cress	plastid	60.84	60.73
CDY31472	Canola	peroxisome	56.83	60.7
Bra016465.1-P	Field mustard	plastid	54.28	60.69
Bra016464.1-P	Field mustard	plastid	61.75	60.43
CDY29527	Canola	peroxisome	58.11	60.19
Bra025822.1-P	Field mustard	peroxisome	58.83	59.48
TraesCS5A01G498800.1	Wheat	peroxisome	59.56	59.24
EER95569	Sorghum	peroxisome	59.38	58.95
HORVU4Hr1G081940.3	Barley	peroxisome	59.02	58.91
TraesCS4D01G323500.1	Wheat	plastid	59.02	58.8
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	59.02	58.7
Zm00001d027519_P001	Maize	plasma membrane	58.83	58.62
Os03t0132000-01	Rice	plasma membrane	58.83	58.51
CDX96638	Canola	peroxisome	56.1	58.44
AT1G20490.2	Thale cress	peroxisome	47.54	58.39
CDX96636	Canola	golgi, vacuole	40.62	58.22
AT1G20480.1	Thale cress	peroxisome	59.74	58.05
Bra016466.1-P	Field mustard	peroxisome	57.56	57.66
CDY31474	Canola	peroxisome	60.47	57.24
CDY33627	Canola	peroxisome	56.1	55.3
CDY33629	Canola	golgi, vacuole	39.89	51.77
VIT_17s0000g01790.t01	Wine grape	peroxisome, plastid	45.9	45.82
VIT_13s0019g05260.t01	Wine grape	peroxisome	42.62	45.35
VIT_14s0171g00300.t01	Wine grape	peroxisome	44.08	44.57
VIT_01s0010g02740.t01	Wine grape	peroxisome, plastid	44.26	44.18
VIT_14s0171g00290.t01	Wine grape	peroxisome	41.53	42.14
VIT_06s0061g00450.t01	Wine grape	peroxisome	40.62	40.99
VIT_08s0007g05050.t01	Wine grape	plastid	38.98	40.38
VIT_02s0109g00250.t01	Wine grape	peroxisome, plastid	39.53	38.0
VIT_11s0052g01110.t01	Wine grape	peroxisome	36.98	37.66
VIT_11s0052g01090.t01	Wine grape	peroxisome	36.79	36.86
VIT_16s0039g02040.t01	Wine grape	peroxisome	35.7	35.77
VIT_01s0010g03720.t01	Wine grape	peroxisome	35.34	34.95

Protein Annotations

EntrezGene:100265969	wikigene:100265969	MapMan:11.7.1.7	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	InterPro:AMP-bd_C
InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ProteinID:CCB45391	ProteinID:CCB45391.1	UniProt:F6H0B9	EMBL:FN595227
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	EntrezGene:LOC100265969	wikigene:LOC100265969
PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF186	SUPFAM:SSF56801
UniParc:UPI00019856AC	ArrayExpress:VIT_18s0001g00280	EnsemblPlantsGene:VIT_18s0001g00280	EnsemblPlants:VIT_18s0001g00280.t01	RefSeq:XP_002285921	RefSeq:XP_002285921.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:1249442..1253931

Molecular Weight (calculated)

60202.9 Da

IEP (calculated)

7.520

GRAVY (calculated)

-0.019

Length

549 amino acids

Sequence
(BLAST)

001: MAHNSELMID PRSGFCKSNS IFYSKRRPLS LPQNEFIDVA TFISSRPHQG KTAFIDAATG RRLTFTDVWR AVDSVSSCLS ELGIRKGDVI LLLTPNSIFF
101: PIVCLSVLSL GAVVTTTNPL NTPREIGKQI VDSKPVLVFT TQSLAPKLTG SNLPIVLMGE HGDYHAGAEV VGSLDEMIRK EPNGKRVGER VNQEDAATLL
201: YSSGTTGESK GVVSSHRNLI AMVQSIVSMN SFEDEEESFV CFLPMFHMYG LGAFALGRLA RGSTVIVLPR FEMNEMLTTI SKYRATCLPL VPPILVALVN
301: GADQIKAKYD LSSLQYIICG GAPLSKEVIE EFLEKYPNVN IRQGYALTES TTVGASTHTL EESRRHGTAG LLSPSMEAKI VDPESGKALS VNRAGELWLR
401: GPTIMKGYFR NPEATASALD SNAWLRTGDL CYIDDDGFLF VVDRLKEVIK YKGYQVPPSE LEALLLTHPE IVDAAVVPFP DKEVGQYPMA YIHRKAGSCL
501: SEDAVMDFIS KQVAPYKRIR RVAFVASIPK TPSGKILRKD LIQLATSKL

Best Arabidopsis Sequence Match ( AT1G20510.1 )
(BLAST)

001: MASVNSRSGF CNSNSTFYSK RTPIPLPPNP SLDVTTFISS QAHRGRIAFI DASTGQNLTF TELWRAVESV ADCLSEIGIR KGHVVLLLSP NSILFPVVCL
101: SVMSLGAIIT TTNPLNTSNE IAKQIKDSNP VLAFTTSQLL PKISAAAKKL PIVLMDEERV DSVGDVRRLV EMMKKEPSGN RVKERVDQDD TATLLYSSGT
201: TGMSKGVISS HRNLIAMVQT IVNRFGSDDG EQRFICTVPM FHIYGLAAFA TGLLAYGSTI IVLSKFEMHE MMSAIGKYQA TSLPLVPPIL VAMVNGADQI
301: KAKYDLSSMH TVLCGGAPLS KEVTEGFAEK YPTVKILQGY GLTESTGIGA STDTVEESRR YGTAGKLSAS MEGRIVDPVT GQILGPKQTG ELWLKGPSIM
401: KGYFSNEEAT SSTLDSEGWL RTGDLCYIDE DGFIFVVDRL KELIKYKGYQ VAPAELEALL LTHPEITDAA VIPFPDKEVG QFPMAYVVRK TGSSLSEKTI
501: MEFVAKQVAP YKRIRKVAFV SSIPKNPSGK ILRKDLIKIA TSNSKL

Arabidopsis Description

4CLL54-coumarate--CoA ligase-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q84P21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.