Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
- peroxisome 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G20500.1 | Thale cress | plastid | 79.87 | 64.91 |
| Bra012233.1-P | Field mustard | plastid | 73.6 | 60.7 |
| CDY01369 | Canola | plastid | 73.6 | 60.59 |
| CDY31883 | Canola | plastid | 73.15 | 60.22 |
| AT5G38120.1 | Thale cress | plastid | 67.79 | 55.09 |
| AT1G20510.1 | Thale cress | plastid | 62.42 | 51.1 |
| VIT_18s0001g00280.t01 | Wine grape | peroxisome, plastid | 58.39 | 47.54 |
| VIT_18s0001g00290.t01 | Wine grape | peroxisome | 57.72 | 46.99 |
| KRH17509 | Soybean | peroxisome, plastid | 56.82 | 46.27 |
| PGSC0003DMT400075394 | Potato | peroxisome, plastid | 54.59 | 44.28 |
| Solyc12g094520.1.1 | Tomato | plastid | 53.91 | 43.74 |
| GSMUA_Achr8P13230_001 | Banana | peroxisome | 48.99 | 43.54 |
| AT1G20480.1 | Thale cress | peroxisome | 54.36 | 43.01 |
| TraesCS4D01G323500.1 | Wheat | plastid | 49.22 | 39.93 |
| TraesCS5A01G498800.1 | Wheat | peroxisome | 49.22 | 39.86 |
| HORVU4Hr1G081940.3 | Barley | peroxisome | 48.77 | 39.64 |
| Zm00001d027519_P001 | Maize | plasma membrane | 48.77 | 39.56 |
| TraesCS4B01G326800.1 | Wheat | peroxisome, plastid | 48.55 | 39.31 |
| EER95569 | Sorghum | peroxisome | 48.1 | 38.88 |
| Os03t0132000-01 | Rice | plasma membrane | 47.43 | 38.41 |
| AT5G63380.1 | Thale cress | peroxisome | 39.37 | 31.32 |
| AT4G05160.1 | Thale cress | peroxisome | 33.78 | 27.76 |
| AT4G19010.1 | Thale cress | peroxisome, plastid | 33.78 | 26.68 |
| AT3G21230.1 | Thale cress | peroxisome | 31.54 | 24.74 |
| AT1G51680.1 | Thale cress | peroxisome | 29.75 | 23.71 |
| AT1G65060.1 | Thale cress | peroxisome | 29.53 | 23.53 |
| AT3G21240.1 | Thale cress | peroxisome | 29.08 | 23.38 |
| AT1G62940.1 | Thale cress | peroxisome | 25.28 | 20.85 |
Protein Annotations
| Gene3D:3.40.50.12780 | MapMan:35.1 | EntrezGene:838637 | UniProt:A0A1P8AV51 | InterPro:AMP-binding_CS | InterPro:AMP-dep_Synth/Lig |
| ProteinID:ANM60520.1 | ArrayExpress:AT1G20490 | EnsemblPlantsGene:AT1G20490 | RefSeq:AT1G20490 | TAIR:AT1G20490 | RefSeq:AT1G20490-TAIR-G |
| EnsemblPlants:AT1G20490.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016874 |
| RefSeq:NP_001322801.1 | RefSeq:NP_173473.2 | PFAM:PF00501 | ScanProsite:PS00455 | PANTHER:PTHR24096 | PANTHER:PTHR24096:SF186 |
| SUPFAM:SSF56801 | UniParc:UPI000034F3B2 | : | : | : | : |
Description
AMP-dependent synthetase and ligase family protein [Source:TAIR;Acc:AT1G20490]
Coordinates
chr1:-:7097211..7099892
Molecular Weight (calculated)
48813.8 Da
IEP (calculated)
6.378
GRAVY (calculated)
-0.012
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYPERDLIV DPRSGFCKSN STFYSKRNPL CLPPNPSLDV TTFISSQPQR GTTAFIDAST GHRLTFSDLW RVVDRVADCL YHEVGIRRGD VVLILSPNSI
101: YIPVVCLSVM SLGAVVTTAN TLNTSGEISK QIAQSNPTLV FTTSQLAPKL AAAISVVLTD EEDEKRVELT SGVRVVGILS EMMKKETSGQ RVRDRVNQDD
201: TAMMLYSSGT TGTSKGVISS HRNLTAYVAK YIDDKWKRDE IFVCTVPMFH SFGLLAFAMG SVASGSTVVI LRRFGLDDMM QAVEKYKATI LSLAPPVLVA
301: MINGADQLKA KYDLTSLRKV RCGGAPLSKE VMDSFLEKYP TVNIFQGYAL TESHGSGAST ESVEESLKYG AVGLLSSGIE ARIVDPDTGR VMGVNQPGEL
401: WLKGPSISKG YFGNEEATNE TINLEGWLKL EISAISMKMG FYLLWID
101: YIPVVCLSVM SLGAVVTTAN TLNTSGEISK QIAQSNPTLV FTTSQLAPKL AAAISVVLTD EEDEKRVELT SGVRVVGILS EMMKKETSGQ RVRDRVNQDD
201: TAMMLYSSGT TGTSKGVISS HRNLTAYVAK YIDDKWKRDE IFVCTVPMFH SFGLLAFAMG SVASGSTVVI LRRFGLDDMM QAVEKYKATI LSLAPPVLVA
301: MINGADQLKA KYDLTSLRKV RCGGAPLSKE VMDSFLEKYP TVNIFQGYAL TESHGSGAST ESVEESLKYG AVGLLSSGIE ARIVDPDTGR VMGVNQPGEL
401: WLKGPSISKG YFGNEEATNE TINLEGWLKL EISAISMKMG FYLLWID
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.