CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96633	Canola	plastid	98.55	98.55
AT1G20510.1	Thale cress	plastid	89.69	90.84
VIT_18s0001g00290.t01	Wine grape	peroxisome	74.68	75.23
PGSC0003DMT400075394	Potato	peroxisome, plastid	73.78	74.05
KRH17509	Soybean	peroxisome, plastid	73.42	73.95
Solyc12g094520.1.1	Tomato	plastid	73.6	73.87
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	68.9	69.4
GSMUA_Achr8P13230_001	Banana	peroxisome	62.75	68.99
CDY31883	Canola	plastid	66.37	67.59
CDY01369	Canola	plastid	65.82	67.03
CDY01370	Canola	peroxisome, plastid	66.0	66.36
CDY31472	Canola	peroxisome	61.3	65.95
CDY33628	Canola	plastid	65.46	65.58
CDX96637	Canola	plastid	65.46	65.46
CDY29527	Canola	peroxisome	62.57	65.28
HORVU4Hr1G081940.3	Barley	peroxisome	64.56	64.91
TraesCS5A01G498800.1	Wheat	peroxisome	64.74	64.86
TraesCS4D01G323500.1	Wheat	plastid	64.38	64.61
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	64.38	64.49
CDX96636	Canola	golgi, vacuole	44.67	64.49
Zm00001d027519_P001	Maize	plasma membrane	63.83	64.07
EER95569	Sorghum	peroxisome	63.83	63.83
CDY45731	Canola	peroxisome	17.72	63.64
CDX96638	Canola	peroxisome	60.22	63.19
Os03t0132000-01	Rice	plasma membrane	62.75	62.86
CDY31474	Canola	peroxisome	62.21	59.31
CDY33627	Canola	peroxisome	59.67	59.25
CDY33629	Canola	golgi, vacuole	42.13	55.08
CDY45730	Canola	vacuole	41.59	50.11
CDY71478	Canola	vacuole	41.41	49.89
CDY53918	Canola	peroxisome	16.64	49.2
CDY32418	Canola	peroxisome	15.55	46.99
CDY46375	Canola	peroxisome	41.41	42.25
CDY39155	Canola	peroxisome	41.05	41.88
CDY39153	Canola	peroxisome	40.33	41.37
CDY46376	Canola	peroxisome	40.14	41.19
CDX78914	Canola	peroxisome, plastid	40.51	39.02
CDX87831	Canola	peroxisome	37.79	37.93
CDY43921	Canola	peroxisome	37.61	37.75
CDY19568	Canola	peroxisome	36.71	36.78
CDY48875	Canola	mitochondrion, plastid, vacuole	29.48	36.71
CDY07442	Canola	peroxisome	36.53	36.33
CDY39293	Canola	peroxisome	36.35	36.09
CDY68920	Canola	peroxisome	35.99	35.99
CDY39816	Canola	peroxisome	35.08	35.93
CDY06431	Canola	peroxisome	35.62	35.62
CDX82208	Canola	peroxisome	35.99	34.79
CDY32416	Canola	peroxisome	35.62	34.32
CDY19570	Canola	peroxisome	34.54	34.17
CDX99401	Canola	peroxisome	37.79	31.29
CDY06435	Canola	vacuole	22.97	28.54
CDY71190	Canola	peroxisome	18.99	28.38
CDY65966	Canola	peroxisome	16.46	25.78
CDY03253	Canola	peroxisome	35.26	12.64
CDX78913	Canola	cytosol	0.18	0.56

Protein Annotations

MapMan:11.7.1.7	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:A0A078H6Z7	UniProt:A0A078H6Z7	InterPro:AMP-bd_C
InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	EnsemblPlants:CDY33631	ProteinID:CDY33631	ProteinID:CDY33631.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSBRNA2T00054975001	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF186
SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI0004EF44D5	:	:	:

Description

BnaC08g19310DBnaC08g19310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6Z7]

Coordinates

chrLK032319:-:78152..80403

Molecular Weight (calculated)

59763.5 Da

IEP (calculated)

8.853

GRAVY (calculated)

0.009

Length

553 amino acids

Sequence
(BLAST)

001: MASVDSRSGF CNSNSTFYSK RKPIPLPPNP SLDVTTFISS QAHLGRTAFI DASTGKNLTF AELWRAVESV GDCLSDMGIR KGHVVLLLSP NSILFPVVCL
101: SVMSLGAVIT TTNPLNTAAE IAKQIKDSNP VIAFTTAELL PKIAAASGGS KKRLPIVLMD EERVDSAGEV RRLAEMMRRK PSGTRVAERV DQDDTATLLY
201: SSGTTGMSKG VVSSHRNLIA MVQTVVNRFG SDVGSQGEQR FICTVPMFHI YGLAAFATGL LAYGSTIIVL SKFEMGEMLS AIGKYQATYL PLVPPILVAM
301: VNGAEQINAK YDLSSLHTVL CGGAPLSKEV TEGFMDKYPT VKILQGYGLT ESTGIGASTD TVEESRRYGT AGKLSASMEG RIVDPVTGRV LGPNRTGELW
401: LKGPSIMKGY FSNEEATSST LDSEGWLRTG DLCYIDEDGF IFVVDRLKEL IKYKGYQVPP AELEALLLTH PEIADAAVIP FPDREVGQFP MAYVVRKAGS
501: LLSEKSVMEF VAKQVAPYKR VRKVAFVSSI PKNPSGKILR KDLIKLATSN SKL

Best Arabidopsis Sequence Match ( AT1G20510.1 )
(BLAST)

001: MASVNSRSGF CNSNSTFYSK RTPIPLPPNP SLDVTTFISS QAHRGRIAFI DASTGQNLTF TELWRAVESV ADCLSEIGIR KGHVVLLLSP NSILFPVVCL
101: SVMSLGAIIT TTNPLNTSNE IAKQIKDSNP VLAFTTSQLL PKISAAAKKL PIVLMDEERV DSVGDVRRLV EMMKKEPSGN RVKERVDQDD TATLLYSSGT
201: TGMSKGVISS HRNLIAMVQT IVNRFGSDDG EQRFICTVPM FHIYGLAAFA TGLLAYGSTI IVLSKFEMHE MMSAIGKYQA TSLPLVPPIL VAMVNGADQI
301: KAKYDLSSMH TVLCGGAPLS KEVTEGFAEK YPTVKILQGY GLTESTGIGA STDTVEESRR YGTAGKLSAS MEGRIVDPVT GQILGPKQTG ELWLKGPSIM
401: KGYFSNEEAT SSTLDSEGWL RTGDLCYIDE DGFIFVVDRL KELIKYKGYQ VAPAELEALL LTHPEITDAA VIPFPDKEVG QFPMAYVVRK TGSSLSEKTI
501: MEFVAKQVAP YKRIRKVAFV SSIPKNPSGK ILRKDLIKIA TSNSKL

Arabidopsis Description

4CLL54-coumarate--CoA ligase-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q84P21]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.