CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99401	Canola	peroxisome	98.32	26.35
CDY06435	Canola	vacuole	2.79	1.12
CDY32418	Canola	peroxisome	1.12	1.09
CDY45731	Canola	peroxisome	0.56	0.65
CDY53918	Canola	peroxisome	0.56	0.53
CDY48875	Canola	mitochondrion, plastid, vacuole	1.12	0.45
CDY33627	Canola	peroxisome	1.12	0.36
CDX78914	Canola	peroxisome, plastid	1.12	0.35
CDY65966	Canola	peroxisome	0.56	0.28
CDY33629	Canola	golgi, vacuole	0.56	0.24
CDY45730	Canola	vacuole	0.56	0.22
CDY71478	Canola	vacuole	0.56	0.22
CDY31472	Canola	peroxisome	0.56	0.19
CDX96638	Canola	peroxisome	0.56	0.19
CDY29527	Canola	peroxisome	0.56	0.19
CDY46376	Canola	peroxisome	0.56	0.19
CDY39153	Canola	peroxisome	0.56	0.19
CDY46375	Canola	peroxisome	0.56	0.18
CDY39155	Canola	peroxisome	0.56	0.18
CDY31883	Canola	plastid	0.56	0.18
CDY01369	Canola	plastid	0.56	0.18
CDY01370	Canola	peroxisome, plastid	0.56	0.18
CDX87831	Canola	peroxisome	0.56	0.18
CDY43921	Canola	peroxisome	0.56	0.18
CDY33628	Canola	plastid	0.56	0.18
CDY33631	Canola	plastid	0.56	0.18
CDX96637	Canola	plastid	0.56	0.18
CDY68920	Canola	peroxisome	0.56	0.18
CDX96633	Canola	plastid	0.56	0.18
CDY06431	Canola	peroxisome	0.56	0.18
CDY07442	Canola	peroxisome	0.56	0.18
CDY39293	Canola	peroxisome	0.56	0.18
CDY19570	Canola	peroxisome	0.56	0.18
CDX82208	Canola	peroxisome	0.56	0.17
CDY32416	Canola	peroxisome	0.56	0.17
CDY31474	Canola	peroxisome	0.56	0.17
CDY39816	Canola	peroxisome	0.0	0.0
CDY19568	Canola	peroxisome	0.0	0.0
CDY03253	Canola	peroxisome	0.0	0.0
CDY71190	Canola	peroxisome	0.0	0.0
CDX96636	Canola	golgi, vacuole	0.0	0.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.570	MapMan:22.5.4.2.2	EnsemblPlants:CDX78913	ProteinID:CDX78913	ProteinID:CDX78913.1
InterPro:ESCRT-II_cplx_Vps25-sub	InterPro:ESCRT-II_cplx_Vps25-sub_N	GO:GO:0000814	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0071985
EnsemblPlantsGene:GSBRNA2T00131400001	InterPro:IPR014041	InterPro:IPR036388	PFAM:PF05871	PANTHER:PTHR13149	SUPFAM:SSF46785
UniParc:UPI0004EF3CC6	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:	:

Description

BnaA01g09800DVacuolar protein sorting-associated protein 25 [Source:Projected from Arabidopsis thaliana (AT4G19003) UniProtKB/Swiss-Prot;Acc:Q8VZC9]

Coordinates

chrLK031816:-:775992..777604

Molecular Weight (calculated)

20710.0 Da

IEP (calculated)

5.391

GRAVY (calculated)

-0.268

Length

179 amino acids

Sequence
(BLAST)

001: MQKLGDFKLP QFFNYPPYFT LQPVRDTREK QIQLWKELIL DYCKSQKVFL IGVEEDFPLF SNSAIDRTLS HEAREIFLSA IVGEGRAEWL DKGHRKCLIL
101: WHRIQDWADI ILKFVRENGL EDSVMTVEEI RSGTESLGTE LEGIDRTILM RALKLLENKG KLALFKGTSA DDEGVKFSV

Best Arabidopsis Sequence Match ( AT4G19003.5 )
(BLAST)

001: MQKLADFKLP QFFNYPPYFT LQPVRDTREK QIQLWKELIL DYCKSQKIFL IGVEEDFPLF SNSAIDRSLS HEARETFLSA IVGEGRAEWL DKGHRKCLIL
101: WHRIQDWADI VLQFVRDNGL EDSVMTVEEI RSGTESLGTE LQGIDRTILM RALKLLENKG KLALFKGTSA DDEGVKFSV

Arabidopsis Description

VPS25Vacuolar protein sorting-associated protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZC9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.