CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

plastid 4
peroxisome 3
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99401	Canola	peroxisome	81.88	70.36
CDY45731	Canola	peroxisome	12.89	48.05
CDY53918	Canola	peroxisome	15.51	47.59
CDY32418	Canola	peroxisome	14.46	45.36
CDY71478	Canola	vacuole	33.62	42.05
CDY31472	Canola	peroxisome	37.63	42.02
CDY29527	Canola	peroxisome	38.33	41.51
CDY45730	Canola	vacuole	33.1	41.39
CDY31883	Canola	plastid	38.85	41.07
CDY39153	Canola	peroxisome	38.5	41.0
CDY46376	Canola	peroxisome	38.33	40.82
CDY01369	Canola	plastid	38.33	40.52
CDY33631	Canola	plastid	39.02	40.51
CDX96638	Canola	peroxisome	37.11	40.42
CDY39155	Canola	peroxisome	38.15	40.41
CDY46375	Canola	peroxisome	37.98	40.22
CDX96633	Canola	plastid	38.68	40.14
CDX96636	Canola	golgi, vacuole	26.48	39.69
CDY33628	Canola	plastid	37.8	39.31
CDY01370	Canola	peroxisome, plastid	37.28	38.91
CDX96637	Canola	plastid	37.46	38.88
CDY33627	Canola	peroxisome	37.11	38.24
CDX87831	Canola	peroxisome	35.19	36.66
CDY43921	Canola	peroxisome	35.19	36.66
CDY48875	Canola	mitochondrion, plastid, vacuole	28.05	36.26
CDY07442	Canola	peroxisome	34.67	35.79
CDY19568	Canola	peroxisome	34.32	35.69
CDY39293	Canola	peroxisome	34.32	35.37
CDX82208	Canola	peroxisome	35.02	35.14
CDY32416	Canola	peroxisome	34.84	34.84
CDY39816	Canola	peroxisome	32.75	34.81
CDY06431	Canola	peroxisome	33.1	34.36
CDY31474	Canola	peroxisome	34.67	34.31
CDY33629	Canola	golgi, vacuole	25.09	34.04
CDY68920	Canola	peroxisome	32.75	34.0
CDY19570	Canola	peroxisome	33.1	33.99
CDY06435	Canola	vacuole	21.25	27.42
CDY71190	Canola	peroxisome	17.07	26.49
CDY65966	Canola	peroxisome	16.03	26.06
CDY03253	Canola	peroxisome	33.1	12.31
CDX78913	Canola	cytosol	0.35	1.12

Protein Annotations

EnsemblPlants:CDX78914	EnsemblPlantsGene:GSBRNA2T00131401001	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:A0A078CS77	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR24096
PANTHER:PTHR24096:SF261	PFAM:PF00501	PFAM:PF13193	ProteinID:CDX78914	ProteinID:CDX78914.1	SEG:seg
SUPFAM:SSF56801	UniParc:UPI0004EEEB78	MapMan:35.1	:	:	:

Description

BnaA01g09810D

Coordinates

chrLK031816:-:777835..780395

Molecular Weight (calculated)

62592.9 Da

IEP (calculated)

7.669

GRAVY (calculated)

0.109

Length

574 amino acids

Sequence
(BLAST)

001: MAATHLHISP NPKTPTPSPQ TPPPPWFSPD TGIYTSKHPS VHLPVDPHLD AASALFSHLH TVDDPSSAAF VDSLTGFSIS YSELQVMVES IAAAIHRDLG
101: VRQGDVVSLV LPNSLYFPLL FLSLISLGTV VTTMNPSSSL GEIKKQVREC NVALAFTSRE SVDKLASLGV VVIRVSESYD LDSVRVENPK FYSIIRGGFD
201: FGSVPKPLVK QDDVAAIMYS SGTTGGTKGV MLTHRNLIAS MELFVRFEAS QYEYPGSSNV YLAALPLCHI YGLSLFVMGL LSVGSTIVVM RRFDVSDVVD
301: VIERFKVTHF PVVPPMLMAL TKKAKGVCGE AFRSLKQVSS GAAPLSRKFI EDFVGTLPHV DLIQGYGMTE STAVGTRGFN TQKLRKYSSV GLIAPNMQAR
401: VVDWSSGSFL PPGNRGELWI QGPGVMKGYL NNPEATEMTI VEKSWLRTGD IAYFDEDGYL FIVDRMKEII KYKGFQIAPA DLEAVLVSHP LIIDAAVTAA
501: PNEECGEIPV AFVVRRQETT LSEQDVISYV AAQVAPYRKV RKVVMVSSIP KSPTGKILRK ELKTILTNCV SSRL

Best Arabidopsis Sequence Match ( AT4G19010.1 )
(BLAST)

001: MAATHLHIPP NPKTQTSHQN PPFWFSSKTG IYTSKFPSLH LPVDPNLDAV SALFSHKHHG DTALIDSLTG FSISHTELQI MVQSMAAGIY HVLGVRQGDV
101: VSLVLPNSVY FPMIFLSLIS LGAIVTTMNP SSSLGEIKKQ VSECSVGLAF TSTENVEKLS SLGVSVISVS ESYDFDSIRI ENPKFYSIMK ESFGFVPKPL
201: IKQDDVAAIM YSSGTTGASK GVLLTHRNLI ASMELFVRFE ASQYEYPGSS NVYLAALPLC HIYGLSLFVM GLLSLGSTIV VMKRFDASDV VNVIERFKIT
301: HFPVVPPMLM ALTKKAKGVC GEVFKSLKQV SSGAAPLSRK FIEDFLQTLP HVDLIQGYGM TESTAVGTRG FNSEKLSRYS SVGLLAPNMQ AKVVDWSSGS
401: FLPPGNRGEL WIQGPGVMKG YLNNPKATQM SIVEDSWLRT GDIAYFDEDG YLFIVDRIKE IIKYKGFQIA PADLEAVLVS HPLIIDAAVT AAPNEECGEI
501: PVAFVVRRQE TTLSEEDVIS YVASQVAPYR KVRKVVMVNS IPKSPTGKIL RKELKRILTN SVSSRL

Arabidopsis Description

4CLL64-coumarate--CoA ligase-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q84P24]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.