CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33629	Canola	golgi, vacuole	71.54	64.78
Bra016464.1-P	Field mustard	plastid	94.26	64.35
CDY45731	Canola	peroxisome	24.28	60.39
CDY31883	Canola	plastid	69.71	49.17
CDY01369	Canola	plastid	69.45	48.99
CDX96637	Canola	plastid	70.5	48.82
CDY01370	Canola	peroxisome, plastid	69.71	48.55
CDY33628	Canola	plastid	69.45	48.19
CDY33631	Canola	plastid	64.49	44.67
CDX96633	Canola	plastid	64.23	44.48
VIT_18s0001g00290.t01	Wine grape	peroxisome	61.88	43.17
KRH17509	Soybean	peroxisome, plastid	60.57	42.26
CDY53918	Canola	peroxisome	20.63	42.25
CDY31474	Canola	peroxisome	63.97	42.24
Solyc12g094520.1.1	Tomato	plastid	60.31	41.92
PGSC0003DMT400075394	Potato	peroxisome, plastid	59.79	41.56
GSMUA_Achr8P13230_001	Banana	peroxisome	54.31	41.35
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	58.22	40.62
Zm00001d027519_P001	Maize	plasma membrane	57.96	40.29
HORVU4Hr1G081940.3	Barley	peroxisome	57.18	39.82
TraesCS5A01G498800.1	Wheat	peroxisome	57.18	39.67
EER95569	Sorghum	peroxisome	57.18	39.6
TraesCS4D01G323500.1	Wheat	plastid	56.92	39.56
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	56.92	39.49
CDX96638	Canola	peroxisome	54.31	39.47
CDY32418	Canola	peroxisome	18.8	39.34
Os03t0132000-01	Rice	plasma membrane	56.4	39.13
CDY29527	Canola	peroxisome	53.79	38.87
CDY45730	Canola	vacuole	46.48	38.78
CDY31472	Canola	peroxisome	51.96	38.72
CDY71478	Canola	vacuole	46.21	38.56
CDY33627	Canola	peroxisome	53.26	36.62
CDY46375	Canola	peroxisome	43.34	30.63
CDY39155	Canola	peroxisome	43.08	30.44
CDY39153	Canola	peroxisome	42.3	30.06
CDY46376	Canola	peroxisome	42.3	30.06
CDX78914	Canola	peroxisome, plastid	39.69	26.48
CDY48875	Canola	mitochondrion, plastid, vacuole	30.55	26.35
CDY07442	Canola	peroxisome	37.86	26.08
CDY39293	Canola	peroxisome	37.86	26.03
CDY68920	Canola	peroxisome	37.08	25.68
CDY06431	Canola	peroxisome	37.08	25.68
CDY43921	Canola	peroxisome	36.81	25.59
CDX87831	Canola	peroxisome	36.55	25.41
CDY19568	Canola	peroxisome	36.29	25.18
CDY39816	Canola	peroxisome	34.99	24.81
CDX82208	Canola	peroxisome	36.29	24.3
CDY32416	Canola	peroxisome	36.03	24.04
CDY19570	Canola	peroxisome	34.73	23.79
CDX99401	Canola	peroxisome	39.69	22.75
CDY06435	Canola	vacuole	21.67	18.65
CDY71190	Canola	peroxisome	17.23	17.84
CDY65966	Canola	peroxisome	13.05	14.16
CDY03253	Canola	peroxisome	34.99	8.68
CDX78913	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.300.30	Gene3D:3.40.50.12780	Gene3D:3.40.50.980	MapMan:35.1	GO:A0A078E5V2	InterPro:AMP-bd_C
InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	EnsemblPlants:CDX96636	ProteinID:CDX96636	ProteinID:CDX96636.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	EnsemblPlantsGene:GSBRNA2T00102840001	PFAM:PF00501	PFAM:PF13193
ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF186	SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI0004EDD9D0
SEG:seg	:	:	:	:	:

Description

BnaA08g21790D

Coordinates

chrLK031895:+:345749..347464

Molecular Weight (calculated)

42053.5 Da

IEP (calculated)

9.774

GRAVY (calculated)

0.040

Length

383 amino acids

Sequence
(BLAST)

001: MRIRRGDVVL ILSPNSISIP VVCLSVMSLG AVVTTANPLN TASEISRQVA DCNPKLAFAT PDQAPKLAAS GAISVVLTEE DEERVGSTLG VRVVGSLSEM
101: MKKKPSERRV RNRVNRDETA MLLYSSGTTG RSKGVIISHG NLIAHVARYI AEPLEPNQTF LCTVPLFHTF GLLNYALATV ALGSTVVLLR KFDLHGMMAA
201: VEKYRATTLV LIRWSSVEQR GYGEFFRELW LKGPAITKGY FRNEEATKET IGSEGWLKTG DLCCIDDGGF VFILDRLKEL IKYKAYQVPP AELEGLLLTH
301: PEIIDAAVIP FPDREVGQLP MAYVVRKTGS LLSEKTLMEF VAKQVAPYKR VRKVAFVSSI PKNPSGKILR KDLIKLATSN STG

Best Arabidopsis Sequence Match ( AT1G20490.1 )
(BLAST)

001: MAYPERDLIV DPRSGFCKSN STFYSKRNPL CLPPNPSLDV TTFISSQPQR GTTAFIDAST GHRLTFSDLW RVVDRVADCL YHEVGIRRGD VVLILSPNSI
101: YIPVVCLSVM SLGAVVTTAN TLNTSGEISK QIAQSNPTLV FTTSQLAPKL AAAISVVLTD EEDEKRVELT SGVRVVGILS EMMKKETSGQ RVRDRVNQDD
201: TAMMLYSSGT TGTSKGVISS HRNLTAYVAK YIDDKWKRDE IFVCTVPMFH SFGLLAFAMG SVASGSTVVI LRRFGLDDMM QAVEKYKATI LSLAPPVLVA
301: MINGADQLKA KYDLTSLRKV RCGGAPLSKE VMDSFLEKYP TVNIFQGYAL TESHGSGAST ESVEESLKYG AVGLLSSGIE ARIVDPDTGR VMGVNQPGEL
401: WLKGPSISKG YFGNEEATNE TINLEGWLKL EISAISMKMG FYLLWID

Arabidopsis Description

AMP-dependent synthetase and ligase family protein [Source:TAIR;Acc:AT1G20490]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.