CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
peroxisome 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29527	Canola	peroxisome	96.11	93.21
CDX96638	Canola	peroxisome	82.88	80.83
AT1G20480.1	Thale cress	peroxisome	86.58	78.76
CDY33627	Canola	peroxisome	82.3	75.94
CDY33631	Canola	plastid	65.95	61.3
CDX96633	Canola	plastid	65.37	60.76
CDY45731	Canola	peroxisome	18.09	60.39
KRH17509	Soybean	peroxisome, plastid	62.45	58.47
CDY01369	Canola	plastid	61.67	58.38
VIT_18s0001g00290.t01	Wine grape	peroxisome	62.26	58.29
CDY31883	Canola	plastid	61.48	58.2
Solyc12g094520.1.1	Tomato	plastid	61.48	57.35
CDY33628	Canola	plastid	61.28	57.07
PGSC0003DMT400075394	Potato	peroxisome, plastid	61.09	56.99
GSMUA_Achr8P13230_001	Banana	peroxisome	55.64	56.86
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	60.7	56.83
CDX96637	Canola	plastid	60.12	55.88
CDY01370	Canola	peroxisome, plastid	59.73	55.82
Zm00001d027519_P001	Maize	plasma membrane	57.0	53.18
HORVU4Hr1G081940.3	Barley	peroxisome	56.81	53.09
Os03t0132000-01	Rice	plasma membrane	57.0	53.08
TraesCS4D01G323500.1	Wheat	plastid	56.61	52.81
TraesCS5A01G498800.1	Wheat	peroxisome	56.61	52.72
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	56.42	52.54
EER95569	Sorghum	peroxisome	56.23	52.26
CDX96636	Canola	golgi, vacuole	38.72	51.96
CDY31474	Canola	peroxisome	57.78	51.21
CDY71478	Canola	vacuole	42.02	47.06
CDY45730	Canola	vacuole	42.02	47.06
CDY33629	Canola	golgi, vacuole	38.33	46.57
CDY53918	Canola	peroxisome	16.93	46.52
CDY32418	Canola	peroxisome	15.76	44.26
CDY46375	Canola	peroxisome	43.58	41.33
CDY39155	Canola	peroxisome	43.0	40.77
CDY39153	Canola	peroxisome	40.86	38.96
CDY46376	Canola	peroxisome	40.66	38.78
CDX78914	Canola	peroxisome, plastid	42.02	37.63
CDY39816	Canola	peroxisome	37.55	35.74
CDY19568	Canola	peroxisome	37.74	35.14
CDY43921	Canola	peroxisome	37.16	34.66
CDX87831	Canola	peroxisome	36.97	34.48
CDY48875	Canola	mitochondrion, plastid, vacuole	28.99	33.56
CDY68920	Canola	peroxisome	35.99	33.45
CDY07442	Canola	peroxisome	35.99	33.27
CDY39293	Canola	peroxisome	35.99	33.21
CDY06431	Canola	peroxisome	35.6	33.09
CDX82208	Canola	peroxisome	36.58	32.87
CDY32416	Canola	peroxisome	36.19	32.4
CDY19570	Canola	peroxisome	33.85	31.13
CDX99401	Canola	peroxisome	37.74	29.04
CDY06435	Canola	vacuole	24.51	28.31
CDY71190	Canola	peroxisome	17.32	24.05
CDY65966	Canola	peroxisome	15.76	22.95
CDY03253	Canola	peroxisome	37.94	12.64
CDX78913	Canola	cytosol	0.19	0.56

Protein Annotations

MapMan:11.7.1.7	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:A0A078H1V5	UniProt:A0A078H1V5	InterPro:AMP-bd_C
InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	EnsemblPlants:CDY31472	ProteinID:CDY31472	ProteinID:CDY31472.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSBRNA2T00047746001	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF186
SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI0004EEBA78	SEG:seg	:	:

Description

BnaC05g15810DBnaC05g15810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1V5]

Coordinates

chrLK032273:-:115579..117677

Molecular Weight (calculated)

56089.3 Da

IEP (calculated)

9.374

GRAVY (calculated)

0.062

Length

514 amino acids

Sequence
(BLAST)

001: MTIDRKSGFC DSTSIFHSKR EPMSLPPNQH LDVTSFISSQ PHRGKTAFVD AVTGRRLGFS ELWLGVERVA SCLYALGVRK GNVVIIISPN SILFPIVSLS
101: VMSLGAVITT ANPINTPGEI SNQIEDSRPV LAFTTRQLNR VASSGEGARA KISRVKQRVN QDDTAALLYS SGTTGKSKGV MLTHRNLIAL VQAYRARFGL
201: EQRTVCTIPM CHIFSFGGFA TSLIALGWTI VVLPRFEMAQ LLSAVEIHRP SHLSLVPPML VAMVNGAEEI NSKYDLSSLQ TVVVGGAPLS REVTEKFVER
301: YSNVRVLQGY GLTETAAIVA SMFTKEETER YGSSGLLAPS VEGKIVDPDT GRVLGVGRTG ELWLRSPTVM KGYFKNEEAT ASTIDLEGWL KTGDLCYIDC
401: EGFVFVVDRL KELIKCNGYQ VAPAELEALL LAHPEIADAA VIPIPDMKAG QYPMAYILRT AGSNLSESEI MGFVAKQVSP YKRIRKVTFL ASIPKNPSGK
501: ILRRELVKLT TSKL

Best Arabidopsis Sequence Match ( AT1G20480.1 )
(BLAST)

001: MAVKHGVDGD GSEIESRTLA VDRKSGFCES TSIFYSKREP MALPPNQFLD VTSFIASQPH RGKTVFVDAV TGRRLSFPEL WLGVERVAGC LYALGVRKGN
101: VVIILSPNSI LFPIVSLSVM SLGAIITTAN PINTSDEISK QIGDSRPVLA FTTCKLVSKL AAASNFNLPV VLMDDYHVPS QSYGDRVKLV GRLETMIETE
201: PSESRVKQRV NQDDTAALLY SSGTTGTSKG VMLSHRNLIA LVQAYRARFG LEQRTICTIP MCHIFGFGGF ATGLIALGWT IVVLPKFDMA KLLSAVETHR
301: SSYLSLVPPI VVAMVNGANE INSKYDLSSL HTVVAGGAPL SREVTEKFVE NYPKVKILQG YGLTESTAIA ASMFNKEETK RYGASGLLAP NVEGKIVDPD
401: TGRVLGVNQT GELWIRSPTV MKGYFKNKEA TASTIDSEGW LKTGDLCYID GDGFVFVVDR LKELIKCNGY QVAPAELEAL LLAHPEIADA AVIPIPDMKA
501: GQYPMAYIVR KVGSNLSESE IMGFVAKQVS PYKKIRKVTF LASIPKNPSG KILRRELTKL TTSKL

Arabidopsis Description

4CLL24-coumarate--CoA ligase-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84P25]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.