CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	golgi
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96636	Canola	golgi, vacuole	64.78	71.54
CDX96637	Canola	plastid	66.19	50.63
CDY33628	Canola	plastid	65.72	50.36
CDY31883	Canola	plastid	63.59	49.54
CDY01369	Canola	plastid	62.88	48.99
CDY01370	Canola	peroxisome, plastid	63.59	48.91
CDY45731	Canola	peroxisome	15.84	43.51
VIT_18s0001g00290.t01	Wine grape	peroxisome	55.32	42.62
CDY31474	Canola	peroxisome	58.16	42.41
CDY33631	Canola	plastid	55.08	42.13
CDX96633	Canola	plastid	55.08	42.13
KRH17509	Soybean	peroxisome, plastid	52.72	40.62
GSMUA_Achr8P13230_001	Banana	peroxisome	47.99	40.36
Solyc12g094520.1.1	Tomato	plastid	52.48	40.29
PGSC0003DMT400075394	Potato	peroxisome, plastid	52.01	39.93
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	51.77	39.89
CDX96638	Canola	peroxisome	48.23	38.71
CDY45730	Canola	vacuole	41.84	38.56
CDY31472	Canola	peroxisome	46.57	38.33
TraesCS4D01G323500.1	Wheat	plastid	49.88	38.29
TraesCS5A01G498800.1	Wheat	peroxisome	49.88	38.22
HORVU4Hr1G081940.3	Barley	peroxisome	49.65	38.18
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	49.65	38.04
Zm00001d027519_P001	Maize	plasma membrane	49.41	37.93
CDY71478	Canola	vacuole	41.13	37.91
Os03t0132000-01	Rice	plasma membrane	48.94	37.5
EER95569	Sorghum	peroxisome	48.94	37.43
CDY29527	Canola	peroxisome	46.34	36.98
CDY33627	Canola	peroxisome	48.23	36.62
CDY53918	Canola	peroxisome	15.37	34.76
CDY32418	Canola	peroxisome	13.71	31.69
CDY46375	Canola	peroxisome	38.3	29.89
CDY39155	Canola	peroxisome	38.3	29.89
CDY39153	Canola	peroxisome	38.06	29.87
CDY46376	Canola	peroxisome	37.83	29.68
CDY48875	Canola	mitochondrion, plastid, vacuole	27.9	26.58
CDY43921	Canola	peroxisome	32.86	25.23
CDX78914	Canola	peroxisome, plastid	34.04	25.09
CDX87831	Canola	peroxisome	32.62	25.05
CDY68920	Canola	peroxisome	32.62	24.95
CDY19568	Canola	peroxisome	32.39	24.82
CDY39816	Canola	peroxisome	31.68	24.81
CDY06431	Canola	peroxisome	32.39	24.77
CDX82208	Canola	peroxisome	31.91	23.6
CDY32416	Canola	peroxisome	31.91	23.52
CDY07442	Canola	peroxisome	30.26	23.02
CDY39293	Canola	peroxisome	30.26	22.98
CDY19570	Canola	peroxisome	30.26	22.9
CDX99401	Canola	peroxisome	34.28	21.71
CDY06435	Canola	vacuole	20.33	19.33
CDY71190	Canola	peroxisome	16.55	18.92
CDY65966	Canola	peroxisome	13.71	16.43
CDY03253	Canola	peroxisome	31.68	8.68
CDX78913	Canola	cytosol	0.24	0.56

Protein Annotations

EnsemblPlants:CDY33629	EnsemblPlantsGene:GSBRNA2T00054972001	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:A0A078H824	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR24096
PANTHER:PTHR24096:SF186	PFAM:PF00501	ProteinID:CDY33629	ProteinID:CDY33629.1	ScanProsite:PS00455	SUPFAM:SSF56801
UniParc:UPI0004EE2F96	UniProt:A0A078H824	MapMan:35.1	:	:	:

Description

BnaC08g19290DBnaC08g19290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H824]

Coordinates

chrLK032319:-:72354..74047

Molecular Weight (calculated)

46287.2 Da

IEP (calculated)

8.979

GRAVY (calculated)

-0.035

Length

423 amino acids

Sequence
(BLAST)

001: MGIRRGDVVL ILSPNSISIP LVCLSVMSLG AVVTTASEIS RQVADCNPKL AFATPEERVG STLGVRVVGS LSEMTKKKPS EIRVRNRVNQ DGTAMLLYSS
101: GTTGRSKGVI ISHGNLIAHV ARYIAEPLEP NQTFLCTVPL FHTFGLLNYA LATVALGSKV VILRKFDLHG MMAAVEKYRA TTLVLIRWRS PLSKEITEFF
201: LEKYPTVDIF QGYALTESNS SGASTDSVEE SKRHGAVGLL SSGVEARIVD PDTGRIMGVN QTGELWLKGP AITKGYIIRY QATKETINSE GWLITGDLCC
301: IDDEGFVFIL DRLKELIKYK AYQVPPAELE GLLLTHPEII DAAVIPFPDR EVGRAASDGV RCKKNRKLVI REVIDGVCSQ TSGTIQESTK GGFRVFHTKK
401: SIREDSAQGP HQARNFQLHG LKL

Best Arabidopsis Sequence Match ( AT1G20500.1 )
(BLAST)

001: MAYPERSLIV DPRSGFCKSN STFYSKRQPL SLPPNLSRDV TTFISSQPHR GKTAFIDAAT GQCLTFSDLW RAVDRVADCL YHEVGIRRGD VVLILSPNSI
101: FIPVVCLSVM SLGAVFTTAN TLNTSGEISK QIADSNPTLV FTTRQLAPKL PVAISVVLTD DEVYQELTSA IRVVGILSEM VKKEPSGQRV RDRVNQDDTA
201: MMLYSSGTTG PSKGVISSHR NLTAHVARFI SDNLKRDDIF ICTVPMFHTY GLLTFAMGTV ALGSTVVILR RFQLHDMMDA VEKHRATALA LAPPVLVAMI
301: NDADLIKAKY DLSSLKTVRC GGAPLSKEVT EGFLEKYPTV DILQGYALTE SNGGGAFTNS AEESRRYGTA GTLTSDVEAR IVDPNTGRFM GINQTGELWL
401: KGPSISKGYF KNQEATNETI NLEGWLKTGD LCYIDEDGFL FVVDRLKELI KYKGYQVPPA ELEALLITHP DILDAAVIPF PDKEAGQYPM AYVVRKHESN
501: LSEKQVIDFI SKQVAPYKKI RKVSFINSIP KTASGKTLRK DLIKLATSKL

Arabidopsis Description

4CLL44-coumarate--CoA ligase-like 4 [Source:UniProtKB/Swiss-Prot;Acc:P0C5B6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.