CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

plastid 3
mitochondrion 1
peroxisome 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012232.1-P	Field mustard	peroxisome, plastid	99.82	100.0
AT1G20500.1	Thale cress	plastid	82.91	82.91
CDY01369	Canola	plastid	81.09	82.14
CDY31883	Canola	plastid	80.91	81.95
CDX96637	Canola	plastid	76.91	76.49
CDY33628	Canola	plastid	76.55	76.27
CDY31474	Canola	peroxisome	79.45	75.34
CDX96636	Canola	golgi, vacuole	48.55	69.71
CDX96633	Canola	plastid	66.73	66.37
CDY33631	Canola	plastid	66.36	66.0
VIT_18s0001g00290.t01	Wine grape	peroxisome	64.73	64.85
CDY45731	Canola	peroxisome	18.0	64.29
CDY33629	Canola	golgi, vacuole	48.91	63.59
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	63.45	63.57
KRH17509	Soybean	peroxisome, plastid	62.91	63.02
Solyc12g094520.1.1	Tomato	plastid	61.82	61.71
PGSC0003DMT400075394	Potato	peroxisome, plastid	61.45	61.34
GSMUA_Achr8P13230_001	Banana	peroxisome	56.0	61.23
CDY31472	Canola	peroxisome	55.82	59.73
CDY29527	Canola	peroxisome	56.36	58.49
CDX96638	Canola	peroxisome	55.64	58.06
Zm00001d027519_P001	Maize	plasma membrane	57.45	57.35
EER95569	Sorghum	peroxisome	57.45	57.14
HORVU4Hr1G081940.3	Barley	peroxisome	57.09	57.09
TraesCS4D01G323500.1	Wheat	plastid	56.91	56.81
TraesCS5A01G498800.1	Wheat	peroxisome	56.73	56.52
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	56.36	56.16
Os03t0132000-01	Rice	plasma membrane	56.36	56.16
CDY33627	Canola	peroxisome	54.91	54.22
CDY71478	Canola	vacuole	39.82	47.71
CDY45730	Canola	vacuole	39.82	47.71
CDY53918	Canola	peroxisome	16.0	47.06
CDY32418	Canola	peroxisome	14.36	43.17
CDY46375	Canola	peroxisome	42.36	42.99
CDY39155	Canola	peroxisome	42.0	42.62
CDY39153	Canola	peroxisome	39.82	40.63
CDY46376	Canola	peroxisome	39.64	40.45
CDX78914	Canola	peroxisome, plastid	38.91	37.28
CDY68920	Canola	peroxisome	36.55	36.35
CDY48875	Canola	mitochondrion, plastid, vacuole	29.27	36.26
CDY06431	Canola	peroxisome	36.0	35.8
CDY43921	Canola	peroxisome	35.09	35.03
CDX87831	Canola	peroxisome	35.09	35.03
CDY19568	Canola	peroxisome	35.09	34.96
CDX82208	Canola	peroxisome	36.18	34.79
CDY32416	Canola	peroxisome	35.82	34.32
CDY19570	Canola	peroxisome	34.73	34.17
CDY39816	Canola	peroxisome	32.73	33.33
CDY07442	Canola	peroxisome	33.27	32.91
CDY39293	Canola	peroxisome	32.73	32.32
CDY71190	Canola	peroxisome	20.36	30.27
CDX99401	Canola	peroxisome	35.45	29.19
CDY06435	Canola	vacuole	22.0	27.19
CDY65966	Canola	peroxisome	16.73	26.06
CDY03253	Canola	peroxisome	33.27	11.86
CDX78913	Canola	cytosol	0.18	0.56

Protein Annotations

MapMan:11.7.1.7	Gene3D:3.30.300.310	Gene3D:3.40.50.12780	GO:A0A078EGY6	InterPro:AMP-bd_C	InterPro:AMP-binding_CS
InterPro:AMP-dep_Synth/Lig	EnsemblPlants:CDY01370	ProteinID:CDY01370	ProteinID:CDY01370.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	EnsemblPlantsGene:GSBRNA2T00112348001	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455
PANTHER:PTHR24096	PANTHER:PTHR24096:SF186	SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI0004EF49A4	SEG:seg

Description

BnaA07g11430D

Coordinates

chrLK031926:+:566838..569492

Molecular Weight (calculated)

59802.1 Da

IEP (calculated)

8.107

GRAVY (calculated)

-0.052

Length

550 amino acids

Sequence
(BLAST)

001: MADPSPPRSL IDSRSGFCKA NSTFYTKRNP LGLPANPSLD VTTFISSQPH RGTTAFIDAA TGHSLSFSDL WRAVDRVAEC LHRDVGIRRG DVVLILSPNS
101: IYIPVVCLSV MSLGAVVTTA NTLNTAGEIS KQIADSNPTL AFTTVQLAPK LPAGISIVLT EEERVGSTGG VNFVGSVSEM MRKEPRGQRV RDRVHQDDTA
201: VMLYSSGTTG PSKGVLSSHG NLTAYVARML TETSMHGTFI CTVPMFHTYG LLTFAMATVA IGSTVVILRR FELNDMMAAV EKYKATTLLL VPPVLVAMVN
301: EADSIKAKYD LSSLKTVRCG GAPLSKEATE GFLEKYPTVN IFQAYALTES NGGGAFIDTV EDSRRFGTSG PLTSDVEARI VDPDTGRFMG INQTGELWLK
401: GPTIAKGYFK NQEATNETIN AEGWLKTGDL CYIDEDGFVF VVDRLKELIK YKGYQVPPAE LEALLITHPD ILDAAVIPFP DKEAGQYPMA YVTRKVESNL
501: SEKQVIEFIS KQQVAPYKKI RKVAFINSIP KTASGKTLRK DLIKLATSKL

Best Arabidopsis Sequence Match ( AT1G20500.1 )
(BLAST)

001: MAYPERSLIV DPRSGFCKSN STFYSKRQPL SLPPNLSRDV TTFISSQPHR GKTAFIDAAT GQCLTFSDLW RAVDRVADCL YHEVGIRRGD VVLILSPNSI
101: FIPVVCLSVM SLGAVFTTAN TLNTSGEISK QIADSNPTLV FTTRQLAPKL PVAISVVLTD DEVYQELTSA IRVVGILSEM VKKEPSGQRV RDRVNQDDTA
201: MMLYSSGTTG PSKGVISSHR NLTAHVARFI SDNLKRDDIF ICTVPMFHTY GLLTFAMGTV ALGSTVVILR RFQLHDMMDA VEKHRATALA LAPPVLVAMI
301: NDADLIKAKY DLSSLKTVRC GGAPLSKEVT EGFLEKYPTV DILQGYALTE SNGGGAFTNS AEESRRYGTA GTLTSDVEAR IVDPNTGRFM GINQTGELWL
401: KGPSISKGYF KNQEATNETI NLEGWLKTGD LCYIDEDGFL FVVDRLKELI KYKGYQVPPA ELEALLITHP DILDAAVIPF PDKEAGQYPM AYVVRKHESN
501: LSEKQVIDFI SKQVAPYKKI RKVSFINSIP KTASGKTLRK DLIKLATSKL

Arabidopsis Description

4CLL44-coumarate--CoA ligase-like 4 [Source:UniProtKB/Swiss-Prot;Acc:P0C5B6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.