CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
peroxisome 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96637	Canola	plastid	95.47	95.3
Bra016465.1-P	Field mustard	plastid	84.42	94.91
CDY31883	Canola	plastid	77.17	78.45
CDY01369	Canola	plastid	76.99	78.27
AT5G38120.1	Thale cress	plastid	76.99	77.27
CDY01370	Canola	peroxisome, plastid	76.27	76.55
CDX96636	Canola	golgi, vacuole	48.19	69.45
CDY31474	Canola	peroxisome	70.47	67.07
CDY33629	Canola	golgi, vacuole	50.36	65.72
CDX96633	Canola	plastid	65.58	65.46
CDY33631	Canola	plastid	65.58	65.46
VIT_18s0001g00290.t01	Wine grape	peroxisome	64.49	64.85
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	63.22	63.57
KRH17509	Soybean	peroxisome, plastid	61.78	62.11
GSMUA_Achr8P13230_001	Banana	peroxisome	56.52	62.03
CDY45731	Canola	peroxisome	17.21	61.69
CDY31472	Canola	peroxisome	57.07	61.28
PGSC0003DMT400075394	Potato	peroxisome, plastid	60.51	60.62
Solyc12g094520.1.1	Tomato	plastid	60.33	60.44
CDY29527	Canola	peroxisome	57.07	59.43
CDX96638	Canola	peroxisome	55.62	58.25
TraesCS4D01G323500.1	Wheat	plastid	56.34	56.44
HORVU4Hr1G081940.3	Barley	peroxisome	56.16	56.36
TraesCS5A01G498800.1	Wheat	peroxisome	56.34	56.34
Os03t0132000-01	Rice	plasma membrane	55.98	55.98
Zm00001d027519_P001	Maize	plasma membrane	55.8	55.9
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	55.8	55.8
EER95569	Sorghum	peroxisome	55.62	55.52
CDY33627	Canola	peroxisome	55.62	55.12
CDY71478	Canola	vacuole	41.3	49.67
CDY45730	Canola	vacuole	41.3	49.67
CDY53918	Canola	peroxisome	15.58	45.99
CDY32418	Canola	peroxisome	14.31	43.17
CDY46375	Canola	peroxisome	41.3	42.07
CDY39155	Canola	peroxisome	40.94	41.7
CDY39153	Canola	peroxisome	40.22	41.19
CDY46376	Canola	peroxisome	39.67	40.63
CDX78914	Canola	peroxisome, plastid	39.31	37.8
CDX87831	Canola	peroxisome	35.14	35.21
CDY43921	Canola	peroxisome	34.96	35.03
CDY19568	Canola	peroxisome	34.78	34.78
CDY68920	Canola	peroxisome	34.78	34.72
CDY48875	Canola	mitochondrion, plastid, vacuole	27.9	34.68
CDY06431	Canola	peroxisome	34.6	34.54
CDY39816	Canola	peroxisome	33.15	33.89
CDX82208	Canola	peroxisome	34.42	33.22
CDY32416	Canola	peroxisome	34.06	32.75
CDY19570	Canola	peroxisome	33.15	32.74
CDY07442	Canola	peroxisome	32.25	32.01
CDY39293	Canola	peroxisome	31.88	31.6
CDX99401	Canola	peroxisome	35.69	29.49
CDY71190	Canola	peroxisome	19.2	28.65
CDY06435	Canola	vacuole	21.56	26.74
CDY65966	Canola	peroxisome	16.12	25.21
CDY03253	Canola	peroxisome	33.88	12.12
CDX78913	Canola	cytosol	0.18	0.56

Protein Annotations

MapMan:11.7.1.7	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:A0A078H9W9	UniProt:A0A078H9W9	InterPro:AMP-bd_C
InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	EnsemblPlants:CDY33628	ProteinID:CDY33628	ProteinID:CDY33628.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSBRNA2T00054970001	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF186
SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI0004EF44B5	SEG:seg	:	:

Description

BnaC08g19280DBnaC08g19280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9W9]

Coordinates

chrLK032319:-:57799..59882

Molecular Weight (calculated)

60210.0 Da

IEP (calculated)

8.668

GRAVY (calculated)

-0.034

Length

552 amino acids

Sequence
(BLAST)

001: MTNSIRSSSS SSLIDPRSGF CNENSTFYSK RNPLPLPANT SLDVTTFISS QPHRGTTAFI DAATGRRISF SELWTAVNRV ADCLHRDVGV RKGDVVLVLS
101: PNSISIPIVC LSVMSLGAVV TTANPLNTAG EISRQMADSN PVLAFTTPEL SQKLAGSGIS IVLEKMGPIR GVRVVGYMSE MMNKEPSGKN RVRDRVHQDD
201: TAMLLYSSGT TGRSKGVMSS HGNLIAHVAR HLVEPMDPHE IFLCTVPMFH TFGLLNYVMA TASLGSTVVI LRRFELHEML AAVVKYRATT LVLVTPVIVA
301: MMNGAELIKA KYDLSSLRIV RCGGAPLSKE VTEGFIEKYP TVDIFQGYAL TESNGAGGSI DTVEESRRYG AVGLLSSGVE ARIVDPDTGR VMGVNRTGEL
401: WLKGPSIAKG YFKNEEATKE CFNLQGWLKT GDLCYIDDDG FLFTVDRLKE LIKYKGYQVP PAELEALLLN HPDILDAAVI PLPDKEAGQC PMAYISRKPE
501: SDLSQKQVIN FISEQVAPYK KIRKVAFIDS IPKTPSGKIL RKDLIKLASS KL

Best Arabidopsis Sequence Match ( AT5G38120.1 )
(BLAST)

001: MANSQRSSSL IDPRNGFCTS NSTFYSKRKP LALPSKESLD ITTFISSQTY RGKTAFIDAA TDHRISFSDL WMAVDRVADC LLHDVGIRRG DVVLVLSPNT
101: ISIPIVCLSV MSLGAVLTTA NPLNTASEIL RQIADSNPKL AFTTPELAPK IASSGISIVL ERVEDTLRVP RGLKVVGNLT EMMKKEPSGQ AVRNQVHKDD
201: TAMLLYSSGT TGRSKGVNSS HGNLIAHVAR YIAEPFEQPQ QTFICTVPLF HTFGLLNFVL ATLALGTTVV ILPRFDLGEM MAAVEKYRAT TLILVPPVLV
301: TMINKADQIM KKYDVSFLRT VRCGGAPLSK EVTQGFMKKY PTVDVYQGYA LTESNGAGAS IESVEESRRY GAVGLLSCGV EARIVDPNTG QVMGLNQTGE
401: LWLKGPSIAK GYFRNEEEII TSEGWLKTGD LCYIDNDGFL FIVDRLKELI KYKGYQVPPA ELEALLLNHP DILDAAVIPF PDKEAGQFPM AYVARKPESN
501: LCEKKVIDFI SKQVAPYKKI RKVAFIDSIP KTPSGKTLRK DLIKFAISKI

Arabidopsis Description

4CLL84-coumarate--CoA ligase-like 8 [Source:UniProtKB/Swiss-Prot;Acc:Q84P26]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.