Factsheet for Bra016466.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
peroxisome 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96638	Canola	peroxisome	93.43	97.15
Bra025822.1-P	Field mustard	peroxisome	83.58	84.35
AT1G20480.1	Thale cress	peroxisome	82.66	80.18
Bra016463.1-P	Field mustard	plastid	62.77	62.21
KRH17509	Soybean	peroxisome, plastid	61.13	61.02
VIT_18s0001g00290.t01	Wine grape	peroxisome	60.4	60.29
Bra012233.1-P	Field mustard	plastid	59.49	60.15
Solyc12g094520.1.1	Tomato	plastid	59.49	59.17
PGSC0003DMT400075394	Potato	peroxisome, plastid	59.31	58.98
GSMUA_Achr8P13230_001	Banana	peroxisome	53.47	58.25
Bra012232.1-P	Field mustard	peroxisome, plastid	57.66	57.56
VIT_18s0001g00280.t01	Wine grape	peroxisome, plastid	57.66	57.56
Bra016465.1-P	Field mustard	plastid	50.73	56.62
Bra016464.1-P	Field mustard	plastid	57.85	56.51
TraesCS4D01G323500.1	Wheat	plastid	55.47	55.17
TraesCS5A01G498800.1	Wheat	peroxisome	55.29	54.89
TraesCS4B01G326800.1	Wheat	peroxisome, plastid	55.11	54.71
HORVU4Hr1G081940.3	Barley	peroxisome	54.74	54.55
Os03t0132000-01	Rice	plasma membrane	54.74	54.35
EER95569	Sorghum	peroxisome	54.2	53.71
Zm00001d027519_P001	Maize	plasma membrane	53.83	53.54
Bra029229.1-P	Field mustard	peroxisome	46.9	45.98
Bra029561.1-P	Field mustard	peroxisome	42.52	42.99
Bra013369.1-P	Field mustard	peroxisome, plastid	40.33	38.57
Bra030429.1-P	Field mustard	peroxisome	37.04	36.78
Bra031266.1-P	Field mustard	peroxisome	36.68	36.41
Bra031263.1-P	Field mustard	peroxisome	36.31	35.99
Bra029560.1-P	Field mustard	peroxisome	34.85	35.77
Bra004109.1-P	Field mustard	peroxisome	35.77	35.25
Bra001819.1-P	Field mustard	peroxisome	36.68	35.02
Bra001820.1-P	Field mustard	peroxisome	36.5	34.19
Bra031265.1-P	Field mustard	peroxisome	34.49	33.81
Bra036646.1-P	Field mustard	peroxisome	36.68	13.59

Protein Annotations

EnsemblPlants:Bra016466.1	EnsemblPlants:Bra016466.1-P	EnsemblPlantsGene:Bra016466	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
PANTHER:PTHR24096	PANTHER:PTHR24096:SF186	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	SEG:seg
SUPFAM:SSF56801	UniParc:UPI0002546B68	UniProt:M4DIY9	MapMan:11.7.1.7	:	:

Description

AT1G20480 (E=2e-235) | 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein

Coordinates

chrA08:+:18606431..18608349

Molecular Weight (calculated)

59756.8 Da

IEP (calculated)

8.441

GRAVY (calculated)

0.036

Length

548 amino acids

Sequence
(BLAST)

001: MALDRKSGFC ESNSIFYSKR DPMVLPPPNQ HLDVTTFISS QPHRGKTALV DAVTGRCLSF SELWLGVKRV AACLYSLGVR KRDVVIILSP NSILYPVVSL
101: AVMSLGAVIT TANPISTSGE IANQLHDSLP VLAFTTCQLV SKLAAAASAS KLPVVLMDEN NGVEAQAEGV KIVGSLELMM ESEPSESRAK QRVNQDDTAA
201: LLYSSGTTGK SKGVMITHRN LIALVQTYRL RFGLEQRTVC TIPMCHVFSF GGFATSLIAL GWTTMVLPKF EMSKLLSAVE THRPTHLTLV PPMVVAMVNG
301: AKEINSKYDV SSLHTVVAGG APLSREVIEK FVKNYPNVKV LQGYGLTETT AIVATMFTKE ETERYGSSGL LSPNVEAKIV DPDTGRLLGV DQTGELWLRS
401: PTVMKGYYKN EEATAETIDS EGWLKTGDLC YIDCEGFVFV VDRLKELIKC NGYQVAPAEL EALLLAHPEI DDAAVIPIPD EKAGQYPMAY IVRKAGSNLS
501: ESEIMGFVAK QVSRYKKIRK VVFLGSIPKN PSGKILRREL KKLTTSKL

Best Arabidopsis Sequence Match ( AT1G20480.1 )
(BLAST)

001: MAVKHGVDGD GSEIESRTLA VDRKSGFCES TSIFYSKREP MALPPNQFLD VTSFIASQPH RGKTVFVDAV TGRRLSFPEL WLGVERVAGC LYALGVRKGN
101: VVIILSPNSI LFPIVSLSVM SLGAIITTAN PINTSDEISK QIGDSRPVLA FTTCKLVSKL AAASNFNLPV VLMDDYHVPS QSYGDRVKLV GRLETMIETE
201: PSESRVKQRV NQDDTAALLY SSGTTGTSKG VMLSHRNLIA LVQAYRARFG LEQRTICTIP MCHIFGFGGF ATGLIALGWT IVVLPKFDMA KLLSAVETHR
301: SSYLSLVPPI VVAMVNGANE INSKYDLSSL HTVVAGGAPL SREVTEKFVE NYPKVKILQG YGLTESTAIA ASMFNKEETK RYGASGLLAP NVEGKIVDPD
401: TGRVLGVNQT GELWIRSPTV MKGYFKNKEA TASTIDSEGW LKTGDLCYID GDGFVFVVDR LKELIKCNGY QVAPAELEAL LLAHPEIADA AVIPIPDMKA
501: GQYPMAYIVR KVGSNLSESE IMGFVAKQVS PYKKIRKVTF LASIPKNPSG KILRRELTKL TTSKL

Arabidopsis Description

4CLL24-coumarate--CoA ligase-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84P25]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.