Factsheet for Solyc03g117870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
extracellular 2
peroxisome 3
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
EpiLoc:	extracellular
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036886	Potato	peroxisome	97.43	97.43
Solyc06g068650.2.1	Tomato	peroxisome	86.79	87.11
Solyc12g042460.1.1	Tomato	peroxisome	79.45	79.01
KRH09616	Soybean	mitochondrion, peroxisome	71.56	72.49
KRH23700	Soybean	peroxisome	72.48	72.21
GSMUA_Achr9P22840_001	Banana	peroxisome	50.46	71.99
GSMUA_Achr1P23450_001	Banana	peroxisome	66.97	70.19
GSMUA_Achr4P12590_001	Banana	peroxisome	62.94	70.14
GSMUA_AchrUn_...	Banana	peroxisome	66.61	70.08
GSMUA_Achr4P05820_001	Banana	peroxisome	66.97	69.92
AT3G21240.1	Thale cress	peroxisome	70.83	69.42
Solyc07g008360.1.1	Tomato	peroxisome	72.29	69.37
CDX87831	Canola	peroxisome	69.91	69.15
Bra030429.1-P	Field mustard	peroxisome	69.91	69.02
CDY43921	Canola	peroxisome	69.54	68.78
GSMUA_Achr7P05070_001	Banana	peroxisome	62.2	68.76
CDY19568	Canola	peroxisome	69.54	68.66
AT1G51680.1	Thale cress	peroxisome	70.64	68.63
Bra031266.1-P	Field mustard	peroxisome	68.99	68.12
TraesCS6B01G179900.2	Wheat	peroxisome	66.06	65.69
TraesCS6D01G141700.1	Wheat	peroxisome	65.87	65.39
TraesCS6A01G151700.1	Wheat	peroxisome	65.5	65.38
EER90150	Sorghum	peroxisome	66.61	65.17
HORVU6Hr1G030390.2	Barley	peroxisome	65.14	64.2
Os02t0177600-01	Rice	plasma membrane	64.95	63.9
Os06t0656500-01	Rice	peroxisome	65.32	63.69
TraesCS7A01G496200.1	Wheat	peroxisome	64.77	63.38
Os08t0448000-01	Rice	peroxisome	62.57	63.27
EES04623	Sorghum	peroxisome	64.4	63.24
TraesCS7D01G483400.1	Wheat	peroxisome	64.95	63.21
TraesCS2B01G171200.1	Wheat	peroxisome	62.57	63.15
TraesCS2D01G150400.1	Wheat	peroxisome	62.2	62.78
TraesCS2A01G145800.1	Wheat	peroxisome	62.2	62.55
EES15085	Sorghum	peroxisome	63.3	62.5
Zm00001d032103_P001	Maize	peroxisome	62.94	61.8
HORVU7Hr1G111130.3	Barley	peroxisome, plastid	64.95	60.0
Zm00001d015459_P003	Maize	peroxisome	64.04	59.45
Os08t0245200-01	Rice	extracellular	60.55	58.51
Solyc03g097030.2.1	Tomato	peroxisome	60.73	58.07
Zm00001d050224_P002	Maize	peroxisome	58.9	57.32
Zm00001d046915_P001	Maize	extracellular	66.24	56.49
EES13602	Sorghum	peroxisome	58.72	56.04
CDY06435	Canola	vacuole	40.0	48.99
HORVU0Hr1G002720.3	Barley	mitochondrion, plastid	40.73	40.66
Solyc11g069050.1.1	Tomato	peroxisome	40.0	40.52
Solyc12g094520.1.1	Tomato	plastid	39.27	38.84
Solyc02g088710.2.1	Tomato	peroxisome	37.61	37.07
Solyc03g111170.2.1	Tomato	nucleus	37.06	36.59
Solyc11g007970.1.1	Tomato	peroxisome	37.43	36.11
Solyc08g076300.2.1	Tomato	peroxisome	35.6	33.8

Protein Annotations

EnsemblPlants:Solyc03g117870.2.1	EnsemblPlantsGene:Solyc03g117870.2	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR24096
PANTHER:PTHR24096:SF207	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	SUPFAM:SSF56801	UniParc:UPI000276788A
UniProt:K4BLT8	MapMan:7.8.1.1	MapMan:9.2.1.3	:	:	:

Description

No Description!

Coordinates

chr3:-:66880919..66884526

Molecular Weight (calculated)

59622.3 Da

IEP (calculated)

5.263

GRAVY (calculated)

0.050

Length

545 amino acids

Sequence
(BLAST)

001: MPMDTETNQS GDFIFRSKLP DIYIPKHLPL HSYCFENLSE FSSRPCLIDG SNDRIYTYAE VELTSRKVAV GLSKLGIQQK DTIMILLPNC PEFVFAFIGA
101: SYLGAISTMA NPLFTPAEVV KQAKASSAKI VITQACFAGK VKDYAIENDL KVICVDSAPE GCVHFSELIQ SDEHEIPEVN IQPNDVVALP YSSGTTGLPK
201: GVMLTHKGLV TSVAQQVDGE NANLYMHSDD VLMCVLPLFH IYSLNSVLLC ALRVGAAILI MQKFDIAQFL ELIQKHKVTI GPFVPPIVLA IAKSPLVDNY
301: DLSSVRTVMS GAAPLGKELE DAVRAKFPNA KLGQGYGMTE AGPVLAMCLA FAKEPFDIKS GACGTVVRNA EMKIVDPDTG CSLPRNQPGE ICIRGDQIMK
401: GYLNDPEATA RTIEKEGWLH TGDIGYIDDD DELFIVDRLK ELIKYKGFQV APAELEALLV NHPNISDAAV VPMKDEQAGE VPVAFVVRSN GSTITEDEVK
501: DFISKQVIFY KRIKRVFFVE TVPKSPSGKI LRKDLRARLA AGISN

Best Arabidopsis Sequence Match ( AT3G21240.1 )
(BLAST)

001: MTTQDVIVND QNDQKQCSND VIFRSRLPDI YIPNHLPLHD YIFENISEFA AKPCLINGPT GEVYTYADVH VTSRKLAAGL HNLGVKQHDV VMILLPNSPE
101: VVLTFLAASF IGAITTSANP FFTPAEISKQ AKASAAKLIV TQSRYVDKIK NLQNDGVLIV TTDSDAIPEN CLRFSELTQS EEPRVDSIPE KISPEDVVAL
201: PFSSGTTGLP KGVMLTHKGL VTSVAQQVDG ENPNLYFNRD DVILCVLPMF HIYALNSIML CSLRVGATIL IMPKFEITLL LEQIQRCKVT VAMVVPPIVL
301: AIAKSPETEK YDLSSVRMVK SGAAPLGKEL EDAISAKFPN AKLGQGYGMT EAGPVLAMSL GFAKEPFPVK SGACGTVVRN AEMKILDPDT GDSLPRNKPG
401: EICIRGNQIM KGYLNDPLAT ASTIDKDGWL HTGDVGFIDD DDELFIVDRL KELIKYKGFQ VAPAELESLL IGHPEINDVA VVAMKEEDAG EVPVAFVVRS
501: KDSNISEDEI KQFVSKQVVF YKRINKVFFT DSIPKAPSGK ILRKDLRARL ANGLMN

Arabidopsis Description

4CL2Cinnamyl alcohol dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B1GUZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.