Factsheet for PGSC0003DMT400036886

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
extracellular 2
peroxisome 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	extracellular
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117870.2.1	Tomato	plastid	97.43	97.43
PGSC0003DMT400074444	Potato	peroxisome	87.52	87.85
PGSC0003DMT400037485	Potato	peroxisome	79.45	79.01
KRH09616	Soybean	mitochondrion, peroxisome	71.93	72.86
KRH23700	Soybean	peroxisome	72.84	72.58
GSMUA_Achr9P22840_001	Banana	peroxisome	50.64	72.25
GSMUA_Achr4P12590_001	Banana	peroxisome	63.12	70.35
GSMUA_Achr4P05820_001	Banana	peroxisome	67.34	70.31
GSMUA_Achr1P23450_001	Banana	peroxisome	66.61	69.81
AT3G21240.1	Thale cress	peroxisome	71.01	69.6
PGSC0003DMT400051216	Potato	peroxisome	72.84	69.53
CDX87831	Canola	peroxisome	70.09	69.33
GSMUA_AchrUn_...	Banana	peroxisome	65.87	69.31
Bra030429.1-P	Field mustard	peroxisome	70.09	69.2
CDY43921	Canola	peroxisome	69.72	68.97
CDY19568	Canola	peroxisome	69.72	68.84
AT1G51680.1	Thale cress	peroxisome	70.83	68.81
GSMUA_Achr7P05070_001	Banana	peroxisome	62.02	68.56
Bra031266.1-P	Field mustard	peroxisome	69.17	68.3
TraesCS6B01G179900.2	Wheat	peroxisome	66.24	65.88
TraesCS6D01G141700.1	Wheat	peroxisome	66.06	65.57
TraesCS6A01G151700.1	Wheat	peroxisome	65.69	65.57
EER90150	Sorghum	peroxisome	66.42	64.99
HORVU6Hr1G030390.2	Barley	peroxisome	65.32	64.38
Os02t0177600-01	Rice	plasma membrane	65.32	64.26
Os06t0656500-01	Rice	peroxisome	65.87	64.22
TraesCS7A01G496200.1	Wheat	peroxisome	64.95	63.55
TraesCS7D01G483400.1	Wheat	peroxisome	65.14	63.39
EES04623	Sorghum	peroxisome	64.4	63.24
TraesCS2B01G171200.1	Wheat	peroxisome	62.39	62.96
Os08t0448000-01	Rice	peroxisome	62.2	62.89
TraesCS2D01G150400.1	Wheat	peroxisome	62.2	62.78
TraesCS2A01G145800.1	Wheat	peroxisome	62.2	62.55
EES15085	Sorghum	peroxisome	62.94	62.14
Zm00001d032103_P001	Maize	peroxisome	62.39	61.26
HORVU7Hr1G111130.3	Barley	peroxisome, plastid	65.14	60.17
Zm00001d015459_P003	Maize	peroxisome	64.22	59.63
Os08t0245200-01	Rice	extracellular	61.1	59.04
PGSC0003DMT400008182	Potato	peroxisome	60.92	58.35
Zm00001d050224_P002	Maize	peroxisome	59.27	57.68
EES13602	Sorghum	peroxisome	59.27	56.57
Zm00001d046915_P001	Maize	extracellular	66.06	56.34
CDY06435	Canola	vacuole	40.18	49.21
HORVU0Hr1G002720.3	Barley	mitochondrion, plastid	41.1	41.03
PGSC0003DMT400020978	Potato	peroxisome	40.18	40.48
PGSC0003DMT400075394	Potato	peroxisome, plastid	38.9	38.48
PGSC0003DMT400039281	Potato	peroxisome	36.33	35.87
PGSC0003DMT400024014	Potato	peroxisome	35.05	33.28

Protein Annotations

Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:7.8.1.1	MapMan:9.2.1.3	ProteinID:AAA33842	ProteinID:AAA33842.1
ProteinID:AAD40664	ProteinID:AAD40664.1	ProteinID:AAD40665	ProteinID:AAD40665.1	EMBL:AF150686	EMBL:AF150687
InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0009698	GO:GO:0009987
GO:GO:0016207	GO:GO:0016874	GO:GO:0019748	UniProt:M1B4F6	EMBL:M62755	PFAM:PF00501
PFAM:PF13193	EnsemblPlantsGene:PGSC0003DMG400014223	PGSC:PGSC0003DMG400014223	EnsemblPlants:PGSC0003DMT400036886	ScanProsite:PS00455	PANTHER:PTHR24096
PANTHER:PTHR24096:SF207	SUPFAM:SSF56801	UniParc:UPI000296508F	:	:	:

Description

4-coumarate--CoA ligase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400014223]

Coordinates

chr3:-:57466692..57469946

Molecular Weight (calculated)

59639.5 Da

IEP (calculated)

5.502

GRAVY (calculated)

0.073

Length

545 amino acids

Sequence
(BLAST)

001: MPMDTETKQS GDLIFRSKLP DIYIPKHLPL HSYCFENLSE FHSRPCLIDG ANDRIYTYAE VELTSRKVAV GLNKLGIQQK DTIMILLPNC PEFVFAFIGA
101: SYLGAISTMA NPLFTPAEVV KQAKASSAKI VITQACFAGK VKDYAIENDL KVICVDSAPE GCVHFSELIQ SDEHEIPDVK IQPDDVVALP YSSGTTGLPK
201: GVMLTHKGLV TSVAQQVDGE NANLYMHSDD VLMCVLPLFH IYSLNSVLLC ALRVGAAILI MQKFDIAQFL ELIPKHKVTI GPFVPPIVLA IAKSPLVHNY
301: DLSSVRTVMS GAAPLGKELE DAVRAKFPNA KLGQGYGMTE AGPVLAMCLA FAKEPFDIKS GACGTVVRNA EMKIVDPDTG CSLPRNQPGE ICIRGDQIMK
401: GYLNDPEATA RTIEKEGWLH TGDIGFIDDD DELFIVDRLK ELIKYKGFQV APAELEALLI NHPDISDAAV VPMIDEQAGE VPVAFVVRSN GSTITEDEVK
501: DFISKQVIFY KRIKRVFFVE TVPKSPSGKI LRKDLRARLA AGISN

Best Arabidopsis Sequence Match ( AT3G21240.1 )
(BLAST)

001: MTTQDVIVND QNDQKQCSND VIFRSRLPDI YIPNHLPLHD YIFENISEFA AKPCLINGPT GEVYTYADVH VTSRKLAAGL HNLGVKQHDV VMILLPNSPE
101: VVLTFLAASF IGAITTSANP FFTPAEISKQ AKASAAKLIV TQSRYVDKIK NLQNDGVLIV TTDSDAIPEN CLRFSELTQS EEPRVDSIPE KISPEDVVAL
201: PFSSGTTGLP KGVMLTHKGL VTSVAQQVDG ENPNLYFNRD DVILCVLPMF HIYALNSIML CSLRVGATIL IMPKFEITLL LEQIQRCKVT VAMVVPPIVL
301: AIAKSPETEK YDLSSVRMVK SGAAPLGKEL EDAISAKFPN AKLGQGYGMT EAGPVLAMSL GFAKEPFPVK SGACGTVVRN AEMKILDPDT GDSLPRNKPG
401: EICIRGNQIM KGYLNDPLAT ASTIDKDGWL HTGDVGFIDD DDELFIVDRL KELIKYKGFQ VAPAELESLL IGHPEINDVA VVAMKEEDAG EVPVAFVVRS
501: KDSNISEDEI KQFVSKQVVF YKRINKVFFT DSIPKAPSGK ILRKDLRARL ANGLMN

Arabidopsis Description

4CL2Cinnamyl alcohol dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B1GUZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.