Factsheet for PGSC0003DMT400037485

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
vacuole 1
peroxisome 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g042460.1.1	Tomato	peroxisome	95.8	95.8
PGSC0003DMT400074444	Potato	peroxisome	81.02	81.77
PGSC0003DMT400036886	Potato	peroxisome	79.01	79.45
KRH09616	Soybean	mitochondrion, peroxisome	68.43	69.7
KRH23700	Soybean	peroxisome	68.61	68.74
GSMUA_Achr9P22840_001	Banana	peroxisome	47.45	68.06
GSMUA_AchrUn_...	Banana	peroxisome	63.87	67.57
GSMUA_Achr4P12590_001	Banana	peroxisome	59.85	67.08
AT3G21240.1	Thale cress	peroxisome	67.88	66.91
GSMUA_Achr1P23450_001	Banana	peroxisome	63.32	66.73
PGSC0003DMT400051216	Potato	peroxisome	69.53	66.72
Bra030429.1-P	Field mustard	peroxisome	66.97	66.49
CDY43921	Canola	peroxisome	66.61	66.24
CDX87831	Canola	peroxisome	66.61	66.24
CDY19568	Canola	peroxisome	66.61	66.12
GSMUA_Achr4P05820_001	Banana	peroxisome	62.96	66.09
AT1G51680.1	Thale cress	peroxisome	67.52	65.95
GSMUA_Achr7P05070_001	Banana	peroxisome	59.31	65.92
Bra031266.1-P	Field mustard	peroxisome	66.24	65.76
TraesCS6B01G179900.2	Wheat	peroxisome	60.4	60.4
TraesCS6D01G141700.1	Wheat	peroxisome	60.4	60.29
TraesCS6A01G151700.1	Wheat	peroxisome	60.04	60.26
EER90150	Sorghum	peroxisome	61.13	60.14
Os08t0448000-01	Rice	peroxisome	58.94	59.93
Os02t0177600-01	Rice	plasma membrane	60.4	59.75
TraesCS2B01G171200.1	Wheat	peroxisome	58.39	59.26
TraesCS2D01G150400.1	Wheat	peroxisome	58.21	59.07
Os06t0656500-01	Rice	peroxisome	60.22	59.03
HORVU6Hr1G030390.2	Barley	peroxisome	59.49	58.95
TraesCS7D01G483400.1	Wheat	peroxisome	60.04	58.75
TraesCS2A01G145800.1	Wheat	peroxisome	58.03	58.67
TraesCS7A01G496200.1	Wheat	peroxisome	59.49	58.53
EES04623	Sorghum	peroxisome	59.12	58.38
Zm00001d032103_P001	Maize	peroxisome	58.76	58.02
EES15085	Sorghum	peroxisome	58.03	57.61
PGSC0003DMT400008182	Potato	peroxisome	59.67	57.47
HORVU7Hr1G111130.3	Barley	peroxisome, plastid	60.22	55.93
Os08t0245200-01	Rice	extracellular	57.12	55.5
Zm00001d015459_P003	Maize	peroxisome	58.94	55.03
Zm00001d050224_P002	Maize	peroxisome	54.74	53.57
EES13602	Sorghum	peroxisome	54.74	52.54
Zm00001d046915_P001	Maize	extracellular	59.85	51.33
CDY06435	Canola	vacuole	37.23	45.84
PGSC0003DMT400020978	Potato	peroxisome	39.78	40.3
PGSC0003DMT400075394	Potato	peroxisome, plastid	39.6	39.38
HORVU0Hr1G002720.3	Barley	mitochondrion, plastid	37.96	38.1
PGSC0003DMT400039281	Potato	peroxisome	35.95	35.69
PGSC0003DMT400024014	Potato	peroxisome	35.22	33.62

Protein Annotations

EntrezGene:102589212	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:7.8.1.1	MapMan:9.2.1.3	InterPro:AMP-bd_C
InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
UniProt:M1B5G8	PFAM:PF00501	PFAM:PF13193	EnsemblPlantsGene:PGSC0003DMG400014466	PGSC:PGSC0003DMG400014466	EnsemblPlants:PGSC0003DMT400037485
ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF207	SUPFAM:SSF56801	UniParc:UPI000296DB3E	RefSeq:XP_006346620.1
SEG:seg	:	:	:	:	:

Description

4-coumarate--CoA ligase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400014466]

Coordinates

chr12:+:49327916..49340023

Molecular Weight (calculated)

60161.0 Da

IEP (calculated)

5.253

GRAVY (calculated)

0.066

Length

548 amino acids

Sequence
(BLAST)

001: MDPNQVGDII FKSKVPDINI PNHLPLHTYC FQNISQFNNR PCLINGSNDQ IYTYADVELT SRKVAIGLNK LGIQQKDTIM ILLPNSPEFV FTFLGASYIG
101: AIATMANPLF TQVEVVKQAK ASNAKLIITQ ECNFNKVKDY AFENDVKVIC IDDDSSSEGY LHFSDLISNS GFTSEHDHLP EVEIHPDDVV ALPYSSGTTG
201: LPKGVMLTHK GLVTSVAQQV DGENPTLFFH SQDVILCISP LFHIYALDSV LLCGLRVGAA ILLMKKFDIV TCLELVQKYK VTIGPFVPPI ILAIAKSPIV
301: DNYDLSSVRI VICGAAPLGK KLEEVVGIKF PNAKLGQGYG MTEAGAPITM CLAFAKEPFE IKSGACGTVI RNAEMKIVDP DTGISLPRNK SGEICIRGDQ
401: IMKGYLNDPE ATARTIDKEG WLHSGDIGYI DDDDELFIVD RLKELIKYKG FQVAPAELEA LLLNLSSISD AAVVPMKDEQ AGEVPVAFVV RSNGSTITED
501: EIKDFISKQV IFYKRIKRIF FVDVIPKSPS GKILRKDLRA KLAAELPN

Best Arabidopsis Sequence Match ( AT3G21240.1 )
(BLAST)

001: MTTQDVIVND QNDQKQCSND VIFRSRLPDI YIPNHLPLHD YIFENISEFA AKPCLINGPT GEVYTYADVH VTSRKLAAGL HNLGVKQHDV VMILLPNSPE
101: VVLTFLAASF IGAITTSANP FFTPAEISKQ AKASAAKLIV TQSRYVDKIK NLQNDGVLIV TTDSDAIPEN CLRFSELTQS EEPRVDSIPE KISPEDVVAL
201: PFSSGTTGLP KGVMLTHKGL VTSVAQQVDG ENPNLYFNRD DVILCVLPMF HIYALNSIML CSLRVGATIL IMPKFEITLL LEQIQRCKVT VAMVVPPIVL
301: AIAKSPETEK YDLSSVRMVK SGAAPLGKEL EDAISAKFPN AKLGQGYGMT EAGPVLAMSL GFAKEPFPVK SGACGTVVRN AEMKILDPDT GDSLPRNKPG
401: EICIRGNQIM KGYLNDPLAT ASTIDKDGWL HTGDVGFIDD DDELFIVDRL KELIKYKGFQ VAPAELESLL IGHPEINDVA VVAMKEEDAG EVPVAFVVRS
501: KDSNISEDEI KQFVSKQVVF YKRINKVFFT DSIPKAPSGK ILRKDLRARL ANGLMN

Arabidopsis Description

4CL2Cinnamyl alcohol dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B1GUZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.