Factsheet for Solyc12g042460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
vacuole 1
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037485	Potato	peroxisome	95.8	95.8
Solyc06g068650.2.1	Tomato	peroxisome	79.56	80.29
Solyc03g117870.2.1	Tomato	plastid	79.01	79.45
KRH09616	Soybean	mitochondrion, peroxisome	67.52	68.77
KRH23700	Soybean	peroxisome	67.7	67.82
GSMUA_AchrUn_...	Banana	peroxisome	63.87	67.57
GSMUA_Achr9P22840_001	Banana	peroxisome	47.08	67.54
AT3G21240.1	Thale cress	peroxisome	67.88	66.91
GSMUA_Achr4P12590_001	Banana	peroxisome	59.49	66.67
CDY19568	Canola	peroxisome	66.97	66.49
GSMUA_Achr1P23450_001	Banana	peroxisome	62.77	66.15
Bra031266.1-P	Field mustard	peroxisome	66.61	66.12
Solyc07g008360.1.1	Tomato	peroxisome	68.25	65.85
Bra030429.1-P	Field mustard	peroxisome	66.24	65.76
CDX87831	Canola	peroxisome	66.06	65.7
GSMUA_Achr4P05820_001	Banana	peroxisome	62.41	65.52
CDY43921	Canola	peroxisome	65.88	65.52
GSMUA_Achr7P05070_001	Banana	peroxisome	58.76	65.31
AT1G51680.1	Thale cress	peroxisome	66.79	65.24
TraesCS6B01G179900.2	Wheat	peroxisome	60.95	60.95
TraesCS6D01G141700.1	Wheat	peroxisome	60.95	60.84
TraesCS6A01G151700.1	Wheat	peroxisome	60.58	60.81
EER90150	Sorghum	peroxisome	61.68	60.68
Os02t0177600-01	Rice	plasma membrane	60.95	60.29
Os08t0448000-01	Rice	peroxisome	59.12	60.11
TraesCS7D01G483400.1	Wheat	peroxisome	60.95	59.64
HORVU6Hr1G030390.2	Barley	peroxisome	60.04	59.49
TraesCS7A01G496200.1	Wheat	peroxisome	60.4	59.43
EES04623	Sorghum	peroxisome	60.04	59.28
TraesCS2B01G171200.1	Wheat	peroxisome	58.21	59.07
TraesCS2D01G150400.1	Wheat	peroxisome	58.03	58.89
Os06t0656500-01	Rice	peroxisome	59.85	58.68
TraesCS2A01G145800.1	Wheat	peroxisome	57.85	58.49
Zm00001d032103_P001	Maize	peroxisome	58.39	57.66
EES15085	Sorghum	peroxisome	57.48	57.07
HORVU7Hr1G111130.3	Barley	peroxisome, plastid	60.95	56.61
Solyc03g097030.2.1	Tomato	peroxisome	58.58	56.32
Zm00001d015459_P003	Maize	peroxisome	60.04	56.05
Os08t0245200-01	Rice	extracellular	57.48	55.85
Zm00001d050224_P002	Maize	peroxisome	55.11	53.93
EES13602	Sorghum	peroxisome	55.11	52.89
Zm00001d046915_P001	Maize	extracellular	60.22	51.64
CDY06435	Canola	vacuole	37.41	46.07
Solyc12g094520.1.1	Tomato	plastid	38.5	38.29
HORVU0Hr1G002720.3	Barley	mitochondrion, plastid	37.77	37.91
Solyc11g069050.1.1	Tomato	peroxisome	37.04	37.73
Solyc11g007970.1.1	Tomato	peroxisome	37.23	36.11
Solyc02g088710.2.1	Tomato	peroxisome	36.13	35.8
Solyc03g111170.2.1	Tomato	nucleus	35.58	35.33
Solyc08g076300.2.1	Tomato	peroxisome	35.22	33.62

Protein Annotations

EnsemblPlants:Solyc12g042460.1.1	EnsemblPlantsGene:Solyc12g042460.1	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR24096
PANTHER:PTHR24096:SF207	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801
UniParc:UPI000276AB24	UniProt:K4DF38	MapMan:7.8.1.1	MapMan:9.2.1.3	:	:

Description

No Description!

Coordinates

chr12:-:40124106..40129867

Molecular Weight (calculated)

60397.5 Da

IEP (calculated)

6.247

GRAVY (calculated)

0.045

Length

548 amino acids

Sequence
(BLAST)

001: MDPNQVGDII FKSKLPDIII PNHLPLHTYC FQNISQFNNR PCLINGSNDQ IYTYADVELT SRKVAIGLNK LGVQQKDTIM ILLPNSPEFV FTFLGASYIG
101: AISTMANPLF TQVEVMKQAK ASNAKLIITQ ECNFNKVKHY AFENDVKVIC IDGHSSSEGY LHFSDLISNS GFTSKHDHLP EMEIHPDDVV ALPYSSGTTG
201: LPKGVMLTHK GLVTSVAQQV DGENPTLFFH SEDVILCISP LFHIYALDSV LLCGLRVGAT ILLMKKFDVV TCLELVQKYK VTIGPFVPPI ILAIAKSQVV
301: DNYDLSSVRI VISGAAPLGK KLEEVVGIKF PNAKLGQGYG MTEAGAPITM CLAFAKEPFE IKSGACGTVI RNAEMKIVDP DTGISLPRNK PGEICIRGDQ
401: IMKGYLNDPE ATKRTIDKEG WLHSGDIGYI DDDDELFIVD RLKELIKYKG FQVAPAELEA LLLNLSNISD AAVVSMKDEQ TGEVPVAFVV RSNGSIITED
501: EIKDFISKQV IFYKRIKRIF FVDVIPKSPS GKILRKDLRA RLAAELPN

Best Arabidopsis Sequence Match ( AT3G21240.1 )
(BLAST)

001: MTTQDVIVND QNDQKQCSND VIFRSRLPDI YIPNHLPLHD YIFENISEFA AKPCLINGPT GEVYTYADVH VTSRKLAAGL HNLGVKQHDV VMILLPNSPE
101: VVLTFLAASF IGAITTSANP FFTPAEISKQ AKASAAKLIV TQSRYVDKIK NLQNDGVLIV TTDSDAIPEN CLRFSELTQS EEPRVDSIPE KISPEDVVAL
201: PFSSGTTGLP KGVMLTHKGL VTSVAQQVDG ENPNLYFNRD DVILCVLPMF HIYALNSIML CSLRVGATIL IMPKFEITLL LEQIQRCKVT VAMVVPPIVL
301: AIAKSPETEK YDLSSVRMVK SGAAPLGKEL EDAISAKFPN AKLGQGYGMT EAGPVLAMSL GFAKEPFPVK SGACGTVVRN AEMKILDPDT GDSLPRNKPG
401: EICIRGNQIM KGYLNDPLAT ASTIDKDGWL HTGDVGFIDD DDELFIVDRL KELIKYKGFQ VAPAELESLL IGHPEINDVA VVAMKEEDAG EVPVAFVVRS
501: KDSNISEDEI KQFVSKQVVF YKRINKVFFT DSIPKAPSGK ILRKDLRARL ANGLMN

Arabidopsis Description

4CL2Cinnamyl alcohol dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B1GUZ3]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.