Factsheet for GSMUA_Achr2P18040_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

cytosol 1
vacuole 1
peroxisome 3
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	peroxisome, plastid	82.53	83.3
EES05680	Sorghum	peroxisome	74.16	70.49
VIT_16s0039g02040.t01	Wine grape	peroxisome	70.45	69.16
Os02t0697400-01	Rice	plasma membrane	72.49	68.54
TraesCS6D01G248000.1	Wheat	peroxisome, plasma membrane	71.56	67.78
HORVU0Hr1G018190.2	Barley	peroxisome	71.56	67.66
TraesCS6B01G294100.1	Wheat	peroxisome	71.93	67.54
TraesCS6A01G266700.1	Wheat	peroxisome	71.56	67.19
PGSC0003DMT400008182	Potato	peroxisome	68.4	64.67
Solyc03g097030.2.1	Tomato	peroxisome	67.66	63.86
KRH77759	Soybean	peroxisome	65.43	63.42
GSMUA_Achr9P22840_001	Banana	peroxisome	44.61	62.83
AT1G65060.1	Thale cress	peroxisome	65.06	62.39
Bra004109.1-P	Field mustard	peroxisome	64.31	62.23
CDY07442	Canola	peroxisome	64.31	62.23
KRH29003	Soybean	plastid	65.06	62.06
CDY39293	Canola	peroxisome	63.75	61.58
GSMUA_Achr1P23450_001	Banana	peroxisome	59.11	61.15
GSMUA_Achr7P05070_001	Banana	peroxisome	55.2	60.24
GSMUA_AchrUn_...	Banana	peroxisome	57.99	60.23
KRH27719	Soybean	peroxisome	60.22	60.11
GSMUA_Achr4P05820_001	Banana	peroxisome	57.62	59.39
GSMUA_Achr4P12590_001	Banana	peroxisome	53.72	59.1
Zm00001d051529_P001	Maize	peroxisome, plasma membrane	68.59	58.2
GSMUA_Achr5P19650_001	Banana	peroxisome	36.25	40.12
GSMUA_Achr8P14210_001	Banana	peroxisome	36.43	39.52
GSMUA_Achr9P07820_001	Banana	peroxisome	13.2	39.01
GSMUA_Achr6P36020_001	Banana	peroxisome	34.39	37.37
GSMUA_AchrUn_...	Banana	peroxisome	32.53	35.64
GSMUA_Achr5P25570_001	Banana	peroxisome	35.5	34.6
GSMUA_Achr8P13230_001	Banana	peroxisome	32.34	34.59
GSMUA_Achr11P...	Banana	peroxisome, plasma membrane	20.45	32.35
GSMUA_Achr11P...	Banana	peroxisome	32.53	32.17
GSMUA_Achr1P13470_001	Banana	peroxisome	29.93	31.2
GSMUA_AchrUn_...	Banana	peroxisome	29.18	28.6

Protein Annotations

EnsemblPlants:GSMUA_Achr2P18040_001	EnsemblPlants:GSMUA_Achr2T18040_001	EnsemblPlantsGene:GSMUA_Achr2G18040_001	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
PANTHER:PTHR24096	PANTHER:PTHR24096:SF169	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	SEG:seg
SUPFAM:SSF56801	UniParc:UPI000296DD57	UniProt:M0S8Z5	MapMan:7.8.1.1	MapMan:9.2.1.3	:

Description

Probable 4-coumarate--CoA ligase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G18040_001]

Coordinates

chr2:+:18463574..18466258

Molecular Weight (calculated)

58225.9 Da

IEP (calculated)

6.394

GRAVY (calculated)

0.130

Length

538 amino acids

Sequence
(BLAST)

001: MISVASETQP QIASPIQPLE TQPPETIVFR SRLPDITISN HLPLHTYCFE KLHETSDAPC LIAATTGKIY TFSETHLLCR KAAAGFSKLG IGHGDVVMVL
101: LQNVPEFIFT FMGACMLGAI TTTANPFCTP ADIFKQIKAS GAKLVVTQSA HPPEDCMNFW EVLDSNETAV PHVTIDPEDP VALPFSSGTT GLPKGVLLTH
201: KSMVSSIAQQ VDGENPNVYL KRDDVVLCVL PLFHIFALNS ALLCSLRAGA ATMLMPKFEI RTMLEGIQTH RVSVAAVVPP LVLALAKNQE IENYDLSSMR
301: IILSGAAPLG KELEDALRIR VPQAILGQGY GMTEAGPVLS MCPAFAKHPT AVKSGSCGII VRNAEMKVVD PDTGFSLGRN QPGEICIRGA QIMKGYLNDV
401: DSTSKTIDVD GWLHTGDIGY VDDDDEVFIV DRVKELIKYK GFQVPPAELE SLLLSHPSIA DAAVVPQKDE AAGEVPVAFV VRAKDSAISE QAIKEFIAKQ
501: VVFYKRLQKI YFVHSIPKSA AGKILRKELK AKLAVASK

Best Arabidopsis Sequence Match ( AT1G65060.1 )
(BLAST)

001: MITAALHEPQ IHKPTDTSVV SDDVLPHSPP TPRIFRSKLP DIDIPNHLPL HTYCFEKLSS VSDKPCLIVG STGKSYTYGE THLICRRVAS GLYKLGIRKG
101: DVIMILLQNS AEFVFSFMGA SMIGAVSTTA NPFYTSQELY KQLKSSGAKL IITHSQYVDK LKNLGENLTL ITTDEPTPEN CLPFSTLITD DETNPFQETV
201: DIGGDDAAAL PFSSGTTGLP KGVVLTHKSL ITSVAQQVDG DNPNLYLKSN DVILCVLPLF HIYSLNSVLL NSLRSGATVL LMHKFEIGAL LDLIQRHRVT
301: IAALVPPLVI ALAKNPTVNS YDLSSVRFVL SGAAPLGKEL QDSLRRRLPQ AILGQGYGMT EAGPVLSMSL GFAKEPIPTK SGSCGTVVRN AELKVVHLET
401: RLSLGYNQPG EICIRGQQIM KEYLNDPEAT SATIDEEGWL HTGDIGYVDE DDEIFIVDRL KEVIKFKGFQ VPPAELESLL INHHSIADAA VVPQNDEVAG
501: EVPVAFVVRS NGNDITEEDV KEYVAKQVVF YKRLHKVFFV ASIPKSPSGK ILRKDLKAKL C

Arabidopsis Description

4CL34-coumarate--CoA ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S777]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.