Factsheet for TraesCS6D01G248000.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plasma membrane

Predictor Summary:

peroxisome 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane
Any Predictor:	peroxisome, secretory
MultiLoc:	peroxisome
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G294100.1	Wheat	peroxisome	98.24	97.38
TraesCS6A01G266700.1	Wheat	peroxisome	97.89	97.03
HORVU0Hr1G018190.2	Barley	peroxisome	94.01	93.85
Os02t0697400-01	Rice	plasma membrane	86.62	86.47
EES05680	Sorghum	peroxisome	85.21	85.51
GSMUA_Achr11P...	Banana	peroxisome, plastid	69.01	73.55
Zm00001d051529_P001	Maize	peroxisome, plasma membrane	80.46	72.08
GSMUA_Achr2P18040_001	Banana	peroxisome, plastid	67.78	71.56
VIT_16s0039g02040.t01	Wine grape	peroxisome	68.84	71.35
Bra004109.1-P	Field mustard	peroxisome	64.79	66.19
CDY07442	Canola	peroxisome	64.79	66.19
KRH77759	Soybean	peroxisome	64.44	65.95
CDY39293	Canola	peroxisome	64.44	65.71
AT1G65060.1	Thale cress	peroxisome	64.79	65.6
KRH29003	Soybean	plastid	63.73	64.18
PGSC0003DMT400008182	Potato	peroxisome	64.08	63.97
Solyc03g097030.2.1	Tomato	peroxisome	63.73	63.51
TraesCS2D01G150400.1	Wheat	peroxisome	59.15	62.22
KRH27719	Soybean	peroxisome	58.98	62.15
TraesCS7D01G483400.1	Wheat	peroxisome	60.92	61.79
TraesCS6D01G141700.1	Wheat	peroxisome	58.63	60.66
TraesCS4D01G268400.1	Wheat	peroxisome	40.85	42.41
TraesCS4D01G323500.1	Wheat	plastid	36.62	37.75
TraesCS4D01G074500.1	Wheat	plastid	33.8	35.36
TraesCS3D01G388100.1	Wheat	peroxisome	33.98	34.34
TraesCS4D01G074700.1	Wheat	peroxisome	32.75	34.07
TraesCS2D01G272200.1	Wheat	plastid	36.27	33.28
TraesCS1D01G200200.1	Wheat	peroxisome	32.75	32.75
TraesCS5D01G561500.1	Wheat	peroxisome	31.51	32.25
TraesCS4D01G074600.1	Wheat	peroxisome	31.16	32.12
TraesCS3D01G468000.1	Wheat	peroxisome	30.81	31.59
TraesCS3D01G388000.2	Wheat	peroxisome, plastid	32.39	30.87

Protein Annotations

EnsemblPlants:TraesCS6D01G248000.1	EnsemblPlantsGene:TraesCS6D01G248000	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR24096
PANTHER:PTHR24096:SF169	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801
TIGR:cd05904	MapMan:7.8.1.1	MapMan:9.2.1.3	:	:	:

Description

No Description!

Coordinates

chr6D:+:351134502..351138318

Molecular Weight (calculated)

60157.7 Da

IEP (calculated)

5.471

GRAVY (calculated)

0.229

Length

568 amino acids

Sequence
(BLAST)

001: MIKVAAPEAV AAAEAVSSAL PEATIFRSKL PDIDIPSHLP LHEYCFARAA ELPDAPCLIA AATGRTYTFA ETHALCRKAA AALHRLGVGH GDRVMILLQN
101: CVEFAVAFFG ASFLGAVSTA ANPFCTPQEI HKQFVASGAK VIVTQSAYVD KLRHESFRRI STSGGEDTLT VITVDDEATT PDGCLPFWGI VGSADEGSLP
201: EVSISPDDAV ALPYSSGTTG LPKGVVLTHG GLVSSVAQQV DGENPNLYMR EGDVALCVLP LFHIFSLNSV LLCAVRAGAA VMLMPKFEMG AMLAGIERWR
301: VTVAAVVPPL VLALAKNPVV EQHDLSSIRI VLSGAAPLGK ELEDALRGRL PQAIFGQGYG MTEAGPVLSM CPAFAREPTP AKSGSCGTVV RNAELKVVDP
401: DTGLSLGRNL PGEICIRGPQ IMKGYLNDPV ATAATIDVEG WLHTGDVGYV DDDDEVFIVD RVKELIKFKG FQVPPAELEA LLIAHPSIAD AAVVPQKDDA
501: AGEVPVAFVV RAADSDIAEE AIKEFVSKQV VFYKRLHKVY FTHAIPKSAS GKILRKELRA KLASPVTA

Best Arabidopsis Sequence Match ( AT1G65060.1 )
(BLAST)

001: MITAALHEPQ IHKPTDTSVV SDDVLPHSPP TPRIFRSKLP DIDIPNHLPL HTYCFEKLSS VSDKPCLIVG STGKSYTYGE THLICRRVAS GLYKLGIRKG
101: DVIMILLQNS AEFVFSFMGA SMIGAVSTTA NPFYTSQELY KQLKSSGAKL IITHSQYVDK LKNLGENLTL ITTDEPTPEN CLPFSTLITD DETNPFQETV
201: DIGGDDAAAL PFSSGTTGLP KGVVLTHKSL ITSVAQQVDG DNPNLYLKSN DVILCVLPLF HIYSLNSVLL NSLRSGATVL LMHKFEIGAL LDLIQRHRVT
301: IAALVPPLVI ALAKNPTVNS YDLSSVRFVL SGAAPLGKEL QDSLRRRLPQ AILGQGYGMT EAGPVLSMSL GFAKEPIPTK SGSCGTVVRN AELKVVHLET
401: RLSLGYNQPG EICIRGQQIM KEYLNDPEAT SATIDEEGWL HTGDIGYVDE DDEIFIVDRL KEVIKFKGFQ VPPAELESLL INHHSIADAA VVPQNDEVAG
501: EVPVAFVVRS NGNDITEEDV KEYVAKQVVF YKRLHKVFFV ASIPKSPSGK ILRKDLKAKL C

Arabidopsis Description

4CL34-coumarate--CoA ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S777]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.