Factsheet for TraesCS2A01G272900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G160300.1	endoplasmic reticulum
TraesCS1B01G176300.1	endoplasmic reticulum
TraesCS1D01G157500.1	endoplasmic reticulum
TraesCS5A01G002900.1	endoplasmic reticulum
TraesCS5B01G003100.1	endoplasmic reticulum
TraesCS5D01G003600.1	endoplasmic reticulum
TraesCS7A01G309300.1
TraesCS7B01G209300.1
TraesCS7D01G306000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62940.1	TraesCS7A01G309300.1	AT1G01280.1	23632852
AT1G62940.1	TraesCS7B01G209300.1	AT1G01280.1	23632852
AT1G62940.1	TraesCS7D01G306000.1	AT1G01280.1	23632852
AT1G62940.1	TraesCS1A01G160300.1	AT1G02050.1	23632852
AT1G62940.1	TraesCS1B01G176300.1	AT1G02050.1	23632852
AT1G62940.1	TraesCS1D01G157500.1	AT1G02050.1	23632852
AT1G62940.1	TraesCS1A01G160300.1	AT1G02050.1	23632852
AT1G62940.1	TraesCS1B01G176300.1	AT1G02050.1	23632852
AT1G62940.1	TraesCS1D01G157500.1	AT1G02050.1	23632852
AT1G62940.1	TraesCS5A01G002900.1	AT4G34850.1	23632852
AT1G62940.1	TraesCS5B01G003100.1	AT4G34850.1	23632852
AT1G62940.1	TraesCS5D01G003600.1	AT4G34850.1	23632852
AT1G62940.1	TraesCS5A01G002900.1	AT4G34850.1	23632852
AT1G62940.1	TraesCS5B01G003100.1	AT4G34850.1	23632852
AT1G62940.1	TraesCS5D01G003600.1	AT4G34850.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G291100.1	Wheat	plastid	99.35	99.52
TraesCS2D01G272200.1	Wheat	plastid	99.19	99.35
HORVU2Hr1G066630.1	Barley	cytosol, mitochondrion, peroxisome, plastid	72.1	99.11
Os04t0310800-01	Rice	peroxisome	76.94	85.95
Zm00001d003702_P001	Maize	plastid	81.94	83.28
EER99996	Sorghum	plastid	79.84	81.82
GSMUA_Achr6P36020_001	Banana	peroxisome	57.42	71.92
VIT_01s0010g03720.t01	Wine grape	peroxisome	60.0	67.03
AT1G62940.1	Thale cress	peroxisome	57.74	66.05
CDY39816	Canola	peroxisome	57.42	65.93
Solyc02g088710.2.1	Tomato	peroxisome	58.06	65.1
KRG98485	Soybean	peroxisome	57.1	64.01
KRH46374	Soybean	peroxisome	56.94	63.83
KXG26308	Sorghum	peroxisome	52.26	59.45
Zm00001d039274_P003	Maize	peroxisome	81.94	50.4
TraesCS4A01G036200.1	Wheat	peroxisome	34.68	39.16
TraesCS2A01G145800.1	Wheat	peroxisome	33.71	38.56
TraesCS6A01G151700.1	Wheat	peroxisome	33.71	38.28
TraesCS7A01G496200.1	Wheat	peroxisome	34.19	38.06
TraesCS5A01G498800.1	Wheat	peroxisome	33.87	38.04
TraesCS4A01G239000.1	Wheat	peroxisome	32.26	36.3
TraesCS6A01G266700.1	Wheat	peroxisome	33.06	35.78
TraesCS3A01G472200.1	Wheat	peroxisome	31.61	35.64
TraesCS3A01G394200.1	Wheat	peroxisome, plastid	31.94	35.48
TraesCS3A01G394300.1	Wheat	peroxisome	31.94	35.36
TraesCS4A01G239100.2	Wheat	plastid	30.81	35.17
TraesCS1A01G196700.1	Wheat	peroxisome	31.61	34.51
TraesCS4A01G238800.1	Wheat	plastid	20.32	29.17
Bra036646.1-P	Field mustard	peroxisome	60.65	25.42
CDY03253	Canola	peroxisome	60.65	24.37

Protein Annotations

MapMan:21.8.1.2	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
GO:GO:0003674	GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0016043	GO:GO:0031956	GO:GO:0046949
GO:GO:0080110	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF312
SUPFAM:SSF56801	EnsemblPlantsGene:TraesCS2A01G272900	EnsemblPlants:TraesCS2A01G272900.1	TIGR:cd05904	SEG:seg	:

Description

No Description!

Coordinates

chr2A:-:447004162..447006094

Molecular Weight (calculated)

66512.5 Da

IEP (calculated)

6.718

GRAVY (calculated)

0.102

Length

620 amino acids

Sequence
(BLAST)

001: MTQPNLTYIP LVLATHKNCV TATSMPSSSS RHSSSKPLIS TNSSKAAAFQ LTTAHQASHN RQRSMGDAAI AVMEEEGEQE HIFRSRFPPV AVPDGVTVPD
101: FVLAGAEAYA DKVALVEAAP GGRSYTYGEV ARDVARFARA LRSVGIRKGH VVVVALPNLA VYPVVSLGVM AAGAVFSGVN PRSLAAEIRK QVEDSEARLV
201: VANEVAYDKV KDVGVPVIGI GEQGLMAGAI SWDELLAAAD RTGPPVVPLE PVQQSDLCAL PYSSGTTGVS KGVMLSHRNL VSNLCSSMFA VGTELLGQVV
301: TLGLMPFFHI YGITGICCAT LRHKGTVVVM DRFDLRTFLG ALVAHRVMFA PLVPPVMLAM VKNPIADEFD LSGLALKSVM TAAAPLAPDL LAAFQRKFPG
401: VQVEEAYGLT EHSCITLTHA GDDPEKGHIA KRNSVGFILP NLEVKFVDPD TGRSLAKNTP GELCVRSQCV MQGYYRKKEE TERTIDAKGW LHTGDIGYID
501: DDGDVFIVDR IKELIKYKGF QVAPAELEAI LLSHPSVEDA AVFGLPDEEA GEIPVSCVVR RSGAAESEAD IMAYVASRVA SYKKLRMLHL VDAIPKSVSG
601: KILRRQLRDE FINMIKPAAA

Best Arabidopsis Sequence Match ( AT1G62940.1 )
(BLAST)

001: MESQKQEDNE YIFRSLYPSV PIPDKLTLPE FVLQGVEEYT ENVAFVEAVT GKAVTYGDVV RDTKRLAKAL TSLGLRKGQV MVVVLPNVAE YGIIALGIMS
101: AGGVFSGANP TALVSEIKKQ VEASGARGII TDATNYEKVK SLGLPVIVLG EEKIEGAVNW KDLLEAGDKC GDTDNEEILQ TDLCALPFSS GTTGLQKGVM
201: LTHRNLIANL CSTLFGVRSE MIGQIVTLGL IPFFHIYGIV GICCATMKNK GKVVAMSRYD LRIFLNALIA HEVSFAPIVP PIILNLVKNP IVDEFDLSKL
301: KLQSVMTAAA PLAPELLTAF EAKFPNVQVQ EAYGLTEHSC ITLTHGDPEK GQGIAKRNSV GFILPNLEVK FIDPDTGRSL PKNTSGELCV RSQCVMQGYF
401: MNKEETDKTI DEQGWLHTGD IGYIDDDGDI FIVDRIKELI KYKGFQVAPA ELEAILLTHP SVEDVAVVPL PDEEAGEIPA ACVVINPKAT EKEEDILNFV
501: AANVAHYKKV RAVHFVDSIP KSLSGKIMRR LLRDKILSIN KK

Arabidopsis Description

4CLL14-coumarate--CoA ligase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ12]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.