Factsheet for Zm00001d003702_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013991_P001	endoplasmic reticulum
Zm00001d019478_P001	endoplasmic reticulum
Zm00001d032662_P001	endoplasmic reticulum

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62940.1	Zm00001d013991_P001	AT1G02050.1	23632852
AT1G62940.1	Zm00001d032662_P001	AT1G02050.1	23632852
AT1G62940.1	Zm00001d013991_P001	AT1G02050.1	23632852
AT1G62940.1	Zm00001d032662_P001	AT1G02050.1	23632852
AT1G62940.1	Zm00001d019478_P001	AT4G34850.1	23632852
AT1G62940.1	Zm00001d019478_P001	AT4G34850.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G066630.1	Barley	cytosol, mitochondrion, peroxisome, plastid	65.25	88.25
Os04t0310800-01	Rice	peroxisome	78.03	85.77
TraesCS2B01G291100.1	Wheat	plastid	83.44	82.23
TraesCS2D01G272200.1	Wheat	plastid	83.28	82.07
TraesCS2A01G272900.1	Wheat	plastid	83.28	81.94
GSMUA_Achr6P36020_001	Banana	peroxisome	57.05	70.3
VIT_01s0010g03720.t01	Wine grape	peroxisome	60.0	65.95
Solyc02g088710.2.1	Tomato	peroxisome	58.85	64.92
CDY39816	Canola	peroxisome	57.05	64.44
KRH46374	Soybean	peroxisome	57.87	63.83
AT1G62940.1	Thale cress	peroxisome	56.56	63.65
KXG26308	Sorghum	peroxisome	56.72	63.49
KRG98485	Soybean	peroxisome	57.54	63.47
Zm00001d039274_P003	Maize	peroxisome	85.25	51.59
Zm00001d027711_P003	Maize	extracellular	35.9	39.46
Zm00001d033055_P001	Maize	peroxisome	34.92	38.73
Zm00001d027519_P001	Maize	plasma membrane	33.93	37.57
Zm00001d050224_P002	Maize	peroxisome	34.26	37.32
Zm00001d032103_P001	Maize	peroxisome	33.61	36.94
Zm00001d015459_P003	Maize	peroxisome	34.59	35.95
Zm00001d019957_P002	Maize	peroxisome	31.97	34.27
Zm00001d018660_P001	Maize	peroxisome	30.98	33.57
Zm00001d046915_P001	Maize	extracellular	34.75	33.18
Zm00001d051529_P001	Maize	peroxisome, plasma membrane	33.61	32.33
Zm00001d012144_P001	Maize	plastid	21.64	32.2
Zm00001d030132_P002	Maize	peroxisome	31.48	30.19
Bra036646.1-P	Field mustard	peroxisome	59.18	24.41
CDY03253	Canola	peroxisome	59.51	23.53

Protein Annotations

MapMan:21.8.1.2	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	UniProt:A0A096PZ50	InterPro:AMP-bd_C	InterPro:AMP-binding_CS
InterPro:AMP-dep_Synth/Lig	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016874
ProteinID:ONM17529.1	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF312
SUPFAM:SSF56801	UniParc:UPI000220F968	EnsemblPlantsGene:Zm00001d003702	EnsemblPlants:Zm00001d003702_P001	EnsemblPlants:Zm00001d003702_T001	SEG:seg

Description

4-coumarate--CoA ligase-like 1

Coordinates

chr2:-:55231147..55233488

Molecular Weight (calculated)

65705.0 Da

IEP (calculated)

5.864

GRAVY (calculated)

0.062

Length

610 amino acids

Sequence
(BLAST)

001: MPSPSSLHHF SPRLPLASTN GKATPFHFHQ FTTNDVQATT NQQELIRMGD AAIAVVHEAD EEEQEHIFRS RFPPVDLPDD VTVPEFVLAG AEAYADKVAL
101: VEAAPGGRSY TYGEVARDVA RFARALRSVG VRKGHVVVVA LPNLAVYPVV SLGIMSAGAV FSGVNPRAIA AEIKKQVEDS DAKLVVTNEV AYDKVKDAGV
201: PVIGIGDDME RLPGAISWDE LLAAADRTGA PVVALDPVQQ SDLCALPYSS GTTGVSKGVM LSHRNLVSNL CSSMFAVGEE LVGQVVTLGL MPFFHIYGIT
301: GICCSTLRHK GTVVVMDRFD LRTFLGALVT HRVMFAPVVP PVMLAMVKSP VADDFDLSGL ALRSIMTAAA PLAPDLLAAF EKKFPGVQVE EAYGLTEHSC
401: ITLTHAASGD DARQGPVQVA KKNSVGFILP NLEVKFVDPD TGRSLPKNTP GEICVRSQAV MQGYYRKKEE TERTIDAKGW LHTGDVGYID DDGDVFIVDR
501: IKELIKYKGF QVAPAELEAI LLSHPSVQDA AVFGLPDEEA GEVPVSCVVR RCGASESEAD IMAYVAGRVA SYKKLRLLQF VDVIHKSVSG KILRRQLRDE
601: FVSRTKTAAA

Best Arabidopsis Sequence Match ( AT1G62940.1 )
(BLAST)

001: MESQKQEDNE YIFRSLYPSV PIPDKLTLPE FVLQGVEEYT ENVAFVEAVT GKAVTYGDVV RDTKRLAKAL TSLGLRKGQV MVVVLPNVAE YGIIALGIMS
101: AGGVFSGANP TALVSEIKKQ VEASGARGII TDATNYEKVK SLGLPVIVLG EEKIEGAVNW KDLLEAGDKC GDTDNEEILQ TDLCALPFSS GTTGLQKGVM
201: LTHRNLIANL CSTLFGVRSE MIGQIVTLGL IPFFHIYGIV GICCATMKNK GKVVAMSRYD LRIFLNALIA HEVSFAPIVP PIILNLVKNP IVDEFDLSKL
301: KLQSVMTAAA PLAPELLTAF EAKFPNVQVQ EAYGLTEHSC ITLTHGDPEK GQGIAKRNSV GFILPNLEVK FIDPDTGRSL PKNTSGELCV RSQCVMQGYF
401: MNKEETDKTI DEQGWLHTGD IGYIDDDGDI FIVDRIKELI KYKGFQVAPA ELEAILLTHP SVEDVAVVPL PDEEAGEIPA ACVVINPKAT EKEEDILNFV
501: AANVAHYKKV RAVHFVDSIP KSLSGKIMRR LLRDKILSIN KK

Arabidopsis Description

4CLL14-coumarate--CoA ligase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ12]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.