Factsheet for Zm00001d019478_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003702_P001
Zm00001d039274_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34850.1	Zm00001d003702_P001	AT1G62940.1	23632852
AT4G34850.1	Zm00001d039274_P003	AT1G62940.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98407	Sorghum	cytosol	94.72	94.5
Os07t0411300-00	Rice	cytosol	84.89	87.41
TraesCS5B01G003100.1	Wheat	cytosol	82.01	81.62
TraesCS5A01G002900.1	Wheat	cytosol	82.49	81.52
TraesCS5D01G003600.1	Wheat	cytosol	82.01	81.24
HORVU5Hr1G000690.2	Barley	cytosol, peroxisome	81.77	74.62
KRH29108	Soybean	cytosol	65.47	70.54
PGSC0003DMT400004133	Potato	cytosol	63.55	69.74
Solyc01g111070.2.1	Tomato	cytosol	63.79	69.45
VIT_03s0038g01460.t01	Wine grape	cytosol	65.23	69.39
CDX69091	Canola	cytosol	64.51	68.62
CDX75466	Canola	cytosol	64.51	68.62
Bra011566.1-P	Field mustard	cytosol	64.27	68.37
CDY40656	Canola	cytosol	64.27	68.37
Bra017681.1-P	Field mustard	cytosol	64.27	68.37
CDY34811	Canola	cytosol	64.03	68.11
Bra034658.1-P	Field mustard	cytosol	64.03	68.11
AT4G34850.1	Thale cress	cytosol	64.03	68.11
CDX72506	Canola	cytosol	63.79	67.86
CDY58814	Canola	cytosol	63.55	67.6
CDY17490	Canola	cytosol	63.55	67.6
KRH24136	Soybean	cytosol	59.23	65.52
Zm00001d032662_P001	Maize	plastid	49.64	53.08
Zm00001d013991_P001	Maize	mitochondrion	49.88	49.41
Zm00001d000438_P001	Maize	cytosol, mitochondrion	38.37	39.8
Zm00001d021562_P001	Maize	cytosol, mitochondrion	38.37	39.8
Zm00001d040483_P001	Maize	cytosol	28.3	39.73
Zm00001d007403_P001	Maize	cytosol	37.65	39.15
Zm00001d052673_P001	Maize	cytosol	37.17	38.75
Zm00001d016014_P001	Maize	cytosol, endoplasmic reticulum, mitochondrion	35.25	37.03
Zm00001d040497_P001	Maize	mitochondrion	34.53	36.36
Zm00001d040479_P001	Maize	mitochondrion	34.53	36.18
GSMUA_Achr5P17860_001	Banana	cytosol, nucleus, peroxisome	65.23	36.17
Zm00001d007717_P001	Maize	mitochondrion, plastid	27.34	32.76
Zm00001d007400_P001	Maize	cytosol	31.89	31.67
Zm00001d052676_P001	Maize	plastid	35.01	30.93
Zm00001d052675_P002	Maize	plastid	34.05	19.27
Zm00001d052916_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	28.06	17.26

Protein Annotations

EntrezGene:100283134	MapMan:21.8.1.4	Gene3D:3.40.47.10	UniProt:B4G105	EMBL:BT043043	EMBL:BT063128
InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	EMBL:EU963546	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0010584	GO:GO:0016043
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	GO:GO:0019748	GO:GO:0030639	GO:GO:0080110
GO:GO:0090439	InterPro:IPR016039	ProteinID:ONM52982.1	PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451
PANTHER:PTHR11877	PANTHER:PTHR11877:SF31	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI00017B7B42
EnsemblPlantsGene:Zm00001d019478	EnsemblPlants:Zm00001d019478_P001	EnsemblPlants:Zm00001d019478_T001	SEG:seg	:	:

Description

Type III polyketide synthase B

Coordinates

chr7:+:35957502..35959139

Molecular Weight (calculated)

44874.8 Da

IEP (calculated)

5.325

GRAVY (calculated)

-0.149

Length

417 amino acids

Sequence
(BLAST)

001: MVSSSMDTTS DKRASSMLAP NPGKATILAL GHAFPQQLVM QDYVVDGFMK NTNCDDPELK EKLTRLCKTT TVRTRYVVMS DEILKNYPEL AQEGLPTMNQ
101: RLDISNAAVT QMATEASLSC VRSWGGALSS ITHLVYVSSS EARFPGGDLH LARALGLSPD VRRVMLAFTG CSGGVAGLRV AKGLAESCPG ARVLLATSET
201: TIVGFRPPSP DRPYDLVGVA LFGDGAGAAV IGTDPAPAER PLFELHSALQ RFLPDTERTI EGRLTEEGIK FQLGRELPHI IEAHVEDFCQ KLMKERQSGE
301: DADGGGPEPM SYGDMFWAVH PGGPAILTKM EGRLGLGADK LRASRCALRD FGNASSNTIV YVLENMVEDT RRRRLLAADD GGEDCEWGLI LAFGPGITFE
401: GILARNLQAT ARASAQL

Best Arabidopsis Sequence Match ( AT4G34850.1 )
(BLAST)

001: MGSIDAAVLG SEKKSNPGKA TILALGKAFP HQLVMQEYLV DGYFKTTKCD DPELKQKLTR LCKTTTVKTR YVVMSEEILK KYPELAIEGG STVTQRLDIC
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV

Arabidopsis Description

PKSBPSKB [Source:UniProtKB/TrEMBL;Acc:A0A178UTW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.