Factsheet for VIT_03s0038g01460.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03720.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34850.1	VIT_01s0010g03720.t01	AT1G62940.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004133	Potato	cytosol	80.87	83.42
Bra011566.1-P	Field mustard	cytosol	82.91	82.91
CDX75466	Canola	cytosol	82.65	82.65
KRH29108	Soybean	cytosol	81.38	82.43
Solyc01g111070.2.1	Tomato	cytosol	80.36	82.25
CDX69091	Canola	cytosol	82.14	82.14
CDY34811	Canola	cytosol	81.89	81.89
Bra034658.1-P	Field mustard	cytosol	81.38	81.38
CDY40656	Canola	cytosol	81.38	81.38
CDY58814	Canola	cytosol	80.87	80.87
CDX72506	Canola	cytosol	80.87	80.87
Bra017681.1-P	Field mustard	cytosol	80.87	80.87
AT4G34850.1	Thale cress	cytosol	80.61	80.61
CDY17490	Canola	cytosol	80.61	80.61
KRH24136	Soybean	cytosol	73.47	76.39
Os07t0411300-00	Rice	cytosol	71.17	68.89
TraesCS5B01G003100.1	Wheat	cytosol	70.41	65.87
EER98407	Sorghum	cytosol	70.15	65.79
TraesCS5A01G002900.1	Wheat	cytosol	70.41	65.4
TraesCS5D01G003600.1	Wheat	cytosol	70.15	65.32
VIT_15s0021g02170.t01	Wine grape	cytosol	64.8	65.3
Zm00001d019478_P001	Maize	cytosol	69.39	65.23
HORVU5Hr1G000690.2	Barley	cytosol, peroxisome	70.41	60.39
VIT_14s0068g00920.t01	Wine grape	cytosol	42.6	42.49
VIT_14s0068g00930.t01	Wine grape	cytosol	42.35	42.24
VIT_16s0022g01020.t01	Wine grape	cytosol	33.16	42.21
VIT_05s0136g00260.t01	Wine grape	cytosol	41.84	42.16
VIT_16s0100g01040.t01	Wine grape	cytosol	41.33	41.33
VIT_10s0042g00930.t01	Wine grape	cytosol	41.07	41.07
VIT_10s0042g00920.t01	Wine grape	cytosol	41.07	41.07
VIT_16s0100g00990.t01	Wine grape	cytosol	40.82	40.82
VIT_16s0100g01010.t01	Wine grape	cytosol	40.82	40.82
VIT_16s0100g00800.t01	Wine grape	cytosol	32.91	40.69
VIT_16s0100g01140.t01	Wine grape	cytosol	40.56	40.56
VIT_16s0100g00910.t01	Wine grape	cytosol	40.56	40.56
VIT_16s0100g01120.t01	Wine grape	cytosol	40.56	40.56
VIT_16s0100g01150.t01	Wine grape	cytosol	40.56	40.56
VIT_16s0100g00830.t01	Wine grape	cytosol	40.56	40.56
VIT_16s0100g00770.t01	Wine grape	cytosol	40.56	40.56
VIT_16s0100g00750.t01	Wine grape	cytosol	40.56	40.56
VIT_16s0100g01170.t01	Wine grape	cytosol	40.56	40.56
VIT_16s0100g01030.t01	Wine grape	cytosol	40.31	40.31
VIT_16s0100g00940.t01	Wine grape	cytosol	40.31	40.31
VIT_16s0100g00780.t01	Wine grape	cytosol	40.05	40.05
VIT_16s0100g01020.t01	Wine grape	cytosol	40.05	40.05
VIT_16s0100g01000.t01	Wine grape	cytosol	40.05	40.05
VIT_10s0042g00910.t01	Wine grape	cytosol	37.24	39.89
VIT_16s0100g00930.t01	Wine grape	cytosol	39.8	39.8
VIT_16s0100g00900.t01	Wine grape	cytosol	39.8	39.8
VIT_16s0100g00840.t01	Wine grape	cytosol	39.8	39.8
VIT_16s0100g00920.t01	Wine grape	cytosol	39.54	39.54
VIT_16s0100g00850.t01	Wine grape	cytosol	39.54	39.54
VIT_16s0100g00880.t01	Wine grape	cytosol	39.29	39.29
VIT_16s0100g00860.t01	Wine grape	cytosol	35.46	39.04
VIT_16s0100g01130.t01	Wine grape	cytosol	40.82	37.56
GSMUA_Achr5P17860_001	Banana	cytosol, nucleus, peroxisome	69.9	36.44
VIT_16s0100g01110.t01	Wine grape	cytosol, mitochondrion, nucleus	35.2	2.66
VIT_12s0059g01780.t01	Wine grape	extracellular, mitochondrion, nucleus	4.08	0.85

Protein Annotations

EntrezGene:100258906	wikigene:100258906	MapMan:21.8.1.4	Gene3D:3.40.47.10	ProteinID:CCB60667	ProteinID:CCB60667.1
InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	UniProt:F6I151	EMBL:FN596508	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0010584
GO:GO:0016043	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	GO:GO:0019748	GO:GO:0030639
GO:GO:0080110	GO:GO:0090439	InterPro:IPR016039	EntrezGene:LOC100258906	wikigene:LOC100258906	PFAM:PF00195
PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF31	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901
InterPro:Thiolase-like	UniParc:UPI00015C8CD1	ArrayExpress:VIT_03s0038g01460	EnsemblPlantsGene:VIT_03s0038g01460	EnsemblPlants:VIT_03s0038g01460.t01	RefSeq:XP_002276653
RefSeq:XP_002276653.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:1006320..1009717

Molecular Weight (calculated)

43109.9 Da

IEP (calculated)

6.019

GRAVY (calculated)

-0.188

Length

392 amino acids

Sequence
(BLAST)

001: MGSGTVEQVG SLKKANPGKA TILALGKAFP HQLVMQEFLV DGYFRNTNCD DPDLKEKLAR LCKTTTVKTR YVVMSEEILR KYPELVIEGQ PTVKQRLDIC
101: NKAVTQMAID ASKACIKKWG RSVSEITHLV YVSSSEARLP GGDLYLAKGL GLSPETHRVQ LYFMGCSGGV AGLRVAKDIA ENNPESRVLL ATSETTIIGF
201: KPPSADRPYD LVGVALFGDG AGAMIIGSDP IPSTERPLFE LHTAIQNFLP DTEKTIDGRL TEEGISFKLA RELPQIIEDH IEAFCDKLIR NVGFSDEDYN
301: KIFWAVHPGG PAILNRMEKR LDLLPEKLNA SRRALADYGN ASSNTIVYVL EYMLEESSKT KRQDQGDGEW GLILAFGPGI TFEGILARNL TV

Best Arabidopsis Sequence Match ( AT4G34850.1 )
(BLAST)

001: MGSIDAAVLG SEKKSNPGKA TILALGKAFP HQLVMQEYLV DGYFKTTKCD DPELKQKLTR LCKTTTVKTR YVVMSEEILK KYPELAIEGG STVTQRLDIC
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV

Arabidopsis Description

PKSBPSKB [Source:UniProtKB/TrEMBL;Acc:A0A178UTW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.