Factsheet for VIT_16s0100g00900.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	cytosol
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0100g00880.t01	Wine grape	cytosol	98.98	98.98
VIT_16s0100g01000.t01	Wine grape	cytosol	98.72	98.72
VIT_16s0100g01020.t01	Wine grape	cytosol	98.21	98.21
VIT_16s0100g00850.t01	Wine grape	cytosol	97.7	97.7
VIT_16s0100g00930.t01	Wine grape	cytosol	97.45	97.45
VIT_16s0100g00940.t01	Wine grape	cytosol	97.19	97.19
VIT_16s0100g00860.t01	Wine grape	cytosol	88.27	97.19
VIT_16s0100g01040.t01	Wine grape	cytosol	95.66	95.66
VIT_16s0100g00920.t01	Wine grape	cytosol	95.41	95.41
VIT_16s0100g01140.t01	Wine grape	cytosol	94.9	94.9
VIT_16s0100g00840.t01	Wine grape	cytosol	94.9	94.9
VIT_16s0100g00800.t01	Wine grape	cytosol	76.53	94.64
VIT_16s0100g01170.t01	Wine grape	cytosol	94.39	94.39
VIT_16s0100g01010.t01	Wine grape	cytosol	94.39	94.39
VIT_16s0100g00770.t01	Wine grape	cytosol	94.39	94.39
VIT_16s0100g00990.t01	Wine grape	cytosol	93.88	93.88
VIT_16s0100g00830.t01	Wine grape	cytosol	93.62	93.62
VIT_16s0100g01030.t01	Wine grape	cytosol	93.62	93.62
VIT_16s0100g00780.t01	Wine grape	cytosol	93.37	93.37
VIT_16s0100g01150.t01	Wine grape	cytosol	93.37	93.37
VIT_16s0100g01120.t01	Wine grape	cytosol	93.37	93.37
VIT_16s0100g00910.t01	Wine grape	cytosol	93.37	93.37
VIT_16s0100g00750.t01	Wine grape	cytosol	93.37	93.37
VIT_10s0042g00930.t01	Wine grape	cytosol	92.6	92.6
VIT_10s0042g00920.t01	Wine grape	cytosol	92.6	92.6
VIT_10s0042g00910.t01	Wine grape	cytosol	83.16	89.07
VIT_16s0100g01130.t01	Wine grape	cytosol	93.11	85.68
VIT_14s0068g00920.t01	Wine grape	cytosol	77.81	77.61
VIT_14s0068g00930.t01	Wine grape	cytosol	77.55	77.35
VIT_05s0136g00260.t01	Wine grape	cytosol	74.74	75.32
GSMUA_Achr6P08170_001	Banana	cytosol	63.78	67.93
VIT_16s0022g01020.t01	Wine grape	cytosol	53.32	67.86
GSMUA_Achr6P08180_001	Banana	cytosol	64.29	63.0
TraesCS7B01G462200.1	Wheat	cytosol	46.94	61.54
VIT_15s0021g02170.t01	Wine grape	cytosol	40.31	40.62
VIT_03s0038g01460.t01	Wine grape	cytosol	39.8	39.8
VIT_16s0100g01110.t01	Wine grape	cytosol, mitochondrion, nucleus	80.36	6.08
VIT_12s0059g01780.t01	Wine grape	extracellular, mitochondrion, nucleus	3.32	0.69

Protein Annotations

KEGG:00941+2.3.1.74	EntrezGene:100241891	wikigene:100241891	EntrezGene:100853675	wikigene:100853675	Gene3D:3.40.47.10
MapMan:9.2.2.1.1.1	UniProt:A5AEM3	ProteinID:AAT84756	ProteinID:AAT84756.1	ProteinID:AAT84757	ProteinID:AAT84757.1
ProteinID:AAT84758	ProteinID:AAT84758.1	ProteinID:AAT84767	ProteinID:AAT84767.1	ProteinID:AAT84783	ProteinID:AAT84783.1
ProteinID:AAT84802	ProteinID:AAT84802.1	ProteinID:AAT84858	ProteinID:AAT84858.1	ProteinID:AAT84875	ProteinID:AAT84875.1
ProteinID:AAT84888	ProteinID:AAT84888.1	ProteinID:AAT84891	ProteinID:AAT84891.1	ProteinID:AAT84898	ProteinID:AAT84898.1
ProteinID:AAT84927	ProteinID:AAT84927.1	ProteinID:AAT84940	ProteinID:AAT84940.1	ProteinID:AAT84950	ProteinID:AAT84950.1
ProteinID:AAT84956	ProteinID:AAT84956.1	ProteinID:AAT84961	ProteinID:AAT84961.1	ProteinID:AAT84966	ProteinID:AAT84966.1
ProteinID:AAT84987	ProteinID:AAT84987.1	ProteinID:AAT84990	ProteinID:AAT84990.1	EMBL:AM424663	EMBL:AY670089
EMBL:AY670090	EMBL:AY670091	EMBL:AY670100	EMBL:AY670116	EMBL:AY670135	EMBL:AY670191
EMBL:AY670208	EMBL:AY670221	EMBL:AY670224	EMBL:AY670231	EMBL:AY670260	EMBL:AY670273
EMBL:AY670283	EMBL:AY670289	EMBL:AY670294	EMBL:AY670299	EMBL:AY670320	EMBL:AY670323
ProteinID:CAN82080	ProteinID:CAN82080.1	ProteinID:CCB56445	ProteinID:CCB56445.1	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_AS
InterPro:Chalcone/stilbene_synthase_N	UniProt:F6HP39	EMBL:FN596000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	GO:GO:0050350
InterPro:IPR016039	EntrezGene:LOC100241891	wikigene:LOC100241891	EntrezGene:LOC100853675	wikigene:LOC100853675	PFAM:PF00195
PFAM:PF02797	PIRSF:PIRSF000451	ScanProsite:PS00441	PANTHER:PTHR11877	PANTHER:PTHR11877:SF27	InterPro:Polyketide_synthase_type-III
SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI0001523991	ArrayExpress:VIT_16s0100g00900	EnsemblPlantsGene:VIT_16s0100g00900	EnsemblPlants:VIT_16s0100g00900.t01
RefSeq:XP_002269293	RefSeq:XP_002269293.2	RefSeq:XP_003634073.1	RefSeq:XP_003634074	RefSeq:XP_003634074.1	SEG:seg

Description

Stilbene synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:A5AEM3]

Coordinates

chr16:-:16385884..16397049

Molecular Weight (calculated)

42627.4 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.046

Length

392 amino acids

Sequence
(BLAST)

001: MASVEEIRNA QRAKGPATVL AIGTATPDNC LYQSDFADYY FRVTKSEHMT ELKKKFNRIC DKSMIKKRYI HLTEEMLEEH PNIGAYMAPS LNIRQEIITA
101: EVPKLGKEAA LKALKEWGQP KSKITHLVFC TTSGVEMPGA DYKLANLLGL EPSVRRVMLY HQGCYAGGTV LRTAKDLAEN NAGARVLVVC SEITVVTFRG
201: PSEDALDSLV GQALFGDGSA AVIVGSDPDI SIERPLFQLV SAAQTFIPNS AGAIAGNLRE VGLTFHLWPN VPTLISENIE NCLTKAFDPI GISDWNSLFW
301: IAHPGGPAIL DAVEAKVGLD KQKLKATRHI LSEYGNMSSA CVLFILDEMR KKSLKEGKTT TGEGLDWGVL FGFGPGLTIE TVVLHSVGTD SN

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.