Factsheet for VIT_16s0100g01040.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	cytosol
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0100g00860.t01	Wine grape	cytosol	86.99	95.79
VIT_16s0100g00850.t01	Wine grape	cytosol	95.66	95.66
VIT_16s0100g00900.t01	Wine grape	cytosol	95.66	95.66
VIT_16s0100g00940.t01	Wine grape	cytosol	95.66	95.66
VIT_16s0100g01020.t01	Wine grape	cytosol	95.41	95.41
VIT_16s0100g01000.t01	Wine grape	cytosol	95.41	95.41
VIT_16s0100g00930.t01	Wine grape	cytosol	95.41	95.41
VIT_16s0100g00920.t01	Wine grape	cytosol	95.41	95.41
VIT_16s0100g00880.t01	Wine grape	cytosol	95.15	95.15
VIT_16s0100g00800.t01	Wine grape	cytosol	76.79	94.95
VIT_16s0100g00840.t01	Wine grape	cytosol	94.9	94.9
VIT_16s0100g01010.t01	Wine grape	cytosol	93.88	93.88
VIT_16s0100g00770.t01	Wine grape	cytosol	93.88	93.88
VIT_16s0100g00990.t01	Wine grape	cytosol	93.37	93.37
VIT_16s0100g01030.t01	Wine grape	cytosol	93.37	93.37
VIT_16s0100g01140.t01	Wine grape	cytosol	93.37	93.37
VIT_16s0100g01120.t01	Wine grape	cytosol	92.86	92.86
VIT_16s0100g01170.t01	Wine grape	cytosol	92.86	92.86
VIT_16s0100g00750.t01	Wine grape	cytosol	92.86	92.86
VIT_16s0100g00830.t01	Wine grape	cytosol	92.6	92.6
VIT_10s0042g00920.t01	Wine grape	cytosol	92.6	92.6
VIT_10s0042g00930.t01	Wine grape	cytosol	92.6	92.6
VIT_16s0100g00780.t01	Wine grape	cytosol	92.35	92.35
VIT_16s0100g01150.t01	Wine grape	cytosol	92.35	92.35
VIT_16s0100g00910.t01	Wine grape	cytosol	92.35	92.35
VIT_10s0042g00910.t01	Wine grape	cytosol	84.18	90.16
VIT_16s0100g01130.t01	Wine grape	cytosol	92.09	84.74
VIT_14s0068g00920.t01	Wine grape	cytosol	77.3	77.1
VIT_14s0068g00930.t01	Wine grape	cytosol	76.79	76.59
VIT_05s0136g00260.t01	Wine grape	cytosol	73.98	74.55
VIT_16s0022g01020.t01	Wine grape	cytosol	53.57	68.18
GSMUA_Achr6P08170_001	Banana	cytosol	62.76	66.85
GSMUA_Achr6P08180_001	Banana	cytosol	63.27	62.0
TraesCS7B01G462200.1	Wheat	cytosol	47.19	61.87
VIT_03s0038g01460.t01	Wine grape	cytosol	41.33	41.33
VIT_15s0021g02170.t01	Wine grape	cytosol	40.31	40.62
VIT_16s0100g01110.t01	Wine grape	cytosol, mitochondrion, nucleus	79.34	6.01
VIT_12s0059g01780.t01	Wine grape	extracellular, mitochondrion, nucleus	3.57	0.74

Protein Annotations

KEGG:00941+2.3.1.74	EntrezGene:100242903	wikigene:100242903	Gene3D:3.40.47.10	MapMan:9.2.2.1.1.1	ProteinID:CCB56432
ProteinID:CCB56432.1	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_AS	InterPro:Chalcone/stilbene_synthase_N	UniProt:F6HP26	EMBL:FN596000
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	EntrezGene:LOC100242903	wikigene:LOC100242903	PFAM:PF00195
PFAM:PF02797	PIRSF:PIRSF000451	ScanProsite:PS00441	PANTHER:PTHR11877	PANTHER:PTHR11877:SF27	InterPro:Polyketide_synthase_type-III
SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI00015CE233	ArrayExpress:VIT_16s0100g01040	EnsemblPlantsGene:VIT_16s0100g01040	EnsemblPlants:VIT_16s0100g01040.t01
RefSeq:XP_002264989	RefSeq:XP_002264989.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr16:+:16509480..16512735

Molecular Weight (calculated)

42851.8 Da

IEP (calculated)

6.245

GRAVY (calculated)

-0.030

Length

392 amino acids

Sequence
(BLAST)

001: MASVDEIRNA QRAKGPATVL AIGTATPDNC LYQSDFADYY FRVTKSEHMT ELKKKFNRIC DKSMIKKRYI HLTEEMLEEH PNIGAYMAPS LNIRQEIITT
101: EVPKLGKEAA LKALKEWGQP ISKITHLVFC TTSGVEMPGA DYKLANLLGL EPSVRRVMLY HQGCYAGGTV LRTAKDLAEN NAGARVLVVC SEITVVTFRG
201: PSESALDSLV GQALFGDGSA AMIIGSDPDI SIERPLFQLV SAAQTFIPNT QGAIAGNLRE VGLTFHLWPN VPTLISENIE KCLTQAFDPL GISDWNSLFW
301: IAHPGGPAIL DAVEAKLSLD KQKLNATRHI LSEYGNMSSA CVLFILDEMR KKSLKEGKTT TGEGLDWGVL FGFGPGLTIE TVVLHSICMD SN

Best Arabidopsis Sequence Match ( AT4G00040.1 )
(BLAST)

001: MLVSARVEKQ KRVAYQGKAT VLALGKALPS NVVSQENLVE EYLREIKCDN LSIKDKLQHL CKSTTVKTRY TVMSRETLHK YPELATEGSP TIKQRLEIAN
101: DAVVQMAYEA SLVCIKEWGR AVEDITHLVY VSSSEFRLPG GDLYLSAQLG LSNEVQRVML YFLGCYGGLS GLRVAKDIAE NNPGSRVLLT TSETTVLGFR
201: PPNKARPYNL VGAALFGDGA AALIIGADPT ESESPFMELH CAMQQFLPQT QGVIDGRLSE EGITFKLGRD LPQKIEDNVE EFCKKLVAKA GSGALELNDL
301: FWAVHPGGPA ILSGLETKLK LKPEKLECSR RALMDYGNVS SNTIFYIMDK VRDELEKKGT EGEEWGLGLA FGPGITFEGF LMRNL

Arabidopsis Description

Type III polyketide synthase C [Source:UniProtKB/Swiss-Prot;Acc:O81305]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.