Factsheet for VIT_16s0022g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0100g00800.t01	Wine grape	cytosol	69.16	67.19
VIT_14s0068g00920.t01	Wine grape	cytosol	70.13	54.96
VIT_16s0100g01170.t01	Wine grape	cytosol	69.81	54.85
VIT_16s0100g01140.t01	Wine grape	cytosol	69.81	54.85
VIT_16s0100g01120.t01	Wine grape	cytosol	69.81	54.85
VIT_16s0100g01030.t01	Wine grape	cytosol	69.48	54.59
VIT_16s0100g01010.t01	Wine grape	cytosol	69.48	54.59
VIT_16s0100g01150.t01	Wine grape	cytosol	69.48	54.59
VIT_16s0100g00920.t01	Wine grape	cytosol	69.48	54.59
VIT_16s0100g00910.t01	Wine grape	cytosol	69.48	54.59
VIT_16s0100g00830.t01	Wine grape	cytosol	69.48	54.59
VIT_16s0100g00770.t01	Wine grape	cytosol	69.48	54.59
VIT_10s0042g00920.t01	Wine grape	cytosol	69.48	54.59
VIT_16s0100g00780.t01	Wine grape	cytosol	69.16	54.34
VIT_14s0068g00930.t01	Wine grape	cytosol	69.16	54.2
VIT_10s0042g00930.t01	Wine grape	cytosol	68.83	54.08
VIT_16s0100g00990.t01	Wine grape	cytosol	68.83	54.08
VIT_16s0100g00930.t01	Wine grape	cytosol	68.51	53.83
VIT_16s0100g00750.t01	Wine grape	cytosol	68.51	53.83
VIT_16s0100g00840.t01	Wine grape	cytosol	68.51	53.83
VIT_05s0136g00260.t01	Wine grape	cytosol	67.86	53.73
VIT_16s0100g00850.t01	Wine grape	cytosol	68.18	53.57
VIT_16s0100g01040.t01	Wine grape	cytosol	68.18	53.57
VIT_16s0100g00940.t01	Wine grape	cytosol	68.18	53.57
VIT_16s0100g00900.t01	Wine grape	cytosol	67.86	53.32
VIT_16s0100g01020.t01	Wine grape	cytosol	67.53	53.06
VIT_16s0100g01000.t01	Wine grape	cytosol	67.53	53.06
VIT_16s0100g00880.t01	Wine grape	cytosol	66.56	52.3
VIT_10s0042g00910.t01	Wine grape	cytosol	61.69	51.91
VIT_16s0100g00860.t01	Wine grape	cytosol	59.09	51.12
VIT_16s0100g01130.t01	Wine grape	cytosol	68.83	49.77
GSMUA_Achr11P...	Banana	mitochondrion	54.87	46.94
GSMUA_Achr2P22970_001	Banana	mitochondrion	50.97	43.61
GSMUA_Achr10P...	Banana	mitochondrion	51.3	43.17
GSMUA_Achr3P22530_001	Banana	cytosol	43.51	43.09
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	50.97	42.9
GSMUA_Achr6P08990_001	Banana	mitochondrion	47.4	42.82
GSMUA_Achr10P...	Banana	mitochondrion	49.03	41.6
GSMUA_Achr5P29740_001	Banana	cytosol, peroxisome, plastid	47.4	39.78
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	41.88	39.33
VIT_15s0021g02170.t01	Wine grape	cytosol	42.86	33.93
VIT_03s0038g01460.t01	Wine grape	cytosol	42.21	33.16
GSMUA_Achr3P01140_001	Banana	cytosol, peroxisome, plasma membrane	49.35	26.53
VIT_16s0100g01110.t01	Wine grape	cytosol, mitochondrion, nucleus	67.53	4.02
VIT_12s0059g01780.t01	Wine grape	extracellular, mitochondrion, nucleus	2.92	0.48

Protein Annotations

EntrezGene:100854415	wikigene:100854415	Gene3D:3.40.47.10	MapMan:50.2.3	EMBL:AM434691	EMBL:AM487161
ProteinID:CAN73761	ProteinID:CAN73761.1	ProteinID:CAN81964	ProteinID:CAN81964.1	ProteinID:CCB49307	ProteinID:CCB49307.1
InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	UniProt:F6HAT3	EMBL:FN595506	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
InterPro:IPR016039	EntrezGene:LOC100854415	wikigene:LOC100854415	PFAM:PF00195	PFAM:PF02797	PANTHER:PTHR11877
PANTHER:PTHR11877:SF27	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI0002108A3A	ArrayExpress:VIT_16s0022g01020
EnsemblPlantsGene:VIT_16s0022g01020	EnsemblPlants:VIT_16s0022g01020.t01	RefSeq:XP_003634057	RefSeq:XP_003634057.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:12637602..12638601

Molecular Weight (calculated)

33617.0 Da

IEP (calculated)

4.971

GRAVY (calculated)

0.131

Length

308 amino acids

Sequence
(BLAST)

001: MIKENPNIGA SLDARQDIAN VEVPKLGKIA AVNAIGEWGQ PKSRITHLVF CTTTSLHMPG ADYQLAKILG LEPKVKRVML YLQGCFGGGT ALRMAKDLAE
101: NNVGARVLVV CSEIITSTFR KPSEIEVENL VGQALFGDGA AALIVGSDPD TLIERPLFQL ISADQMFIPD SENAIEGHVC EMGLVVNLAK NVPNLIFECI
201: DKCMVEAFGP LGINDWNSLF FIIHPGGRAI LDQIEAKLSL EKEKLEVSRH VLREYGNIVS SCVFFVMDEM RKKSFKEEKA TTGEGLEWGV LLGFGPGLTV
301: ETVVLRSQ

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.